Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Pentatricopeptide repeat

Term: IPR002885  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene32910 SustainPine v3.0 814
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene32961 SustainPine v3.0 863
AutoFact: COPZ2; Zeta2-COP 2.0e-10
FL-Next: tr=Putative uncharacterized protein Sb01g000630; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Complete
sp_v3.0_unigene33223 SustainPine v3.0 763
AutoFact: ribosomal protein S3 [Ostrinia nubilalis] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S3 1.138e-10
Complete
sp_v3.0_unigene33374 SustainPine v3.0 932
AutoFact: UPF0016 domain containing protein 5.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Predicted membrane protein 7.946e-08
N-terminus
sp_v3.0_unigene33613 SustainPine v3.0 6531
AutoFact: putative callose synthase 1 catalytic subunit [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 1,3-beta-glucan synthase 4.234e-37
Complete
sp_v3.0_unigene33967 SustainPine v3.0 551
AutoFact: T26F17.17 n=1 Tax=Arabidopsis thaliana RepID=Q9SFE1_ARATH 9.99967e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.52e-15
Putative C-terminus
sp_v3.0_unigene33998 SustainPine v3.0 623
AutoFact: Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Copia-type polyprotein 1.217e-11
Internal
sp_v3.0_unigene34104 SustainPine v3.0 1264
AutoFact: Calreticulin n=2 Tax=Pinaceae RepID=Q9FYV2_PINTA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Calreticulin 1.4013e-45
N-terminus
sp_v3.0_unigene34217 SustainPine v3.0 821
AutoFact: Pentatricopeptide repeat-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L3A6_ARALL 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 1.398e-10
Putative Complete
sp_v3.0_unigene34237 SustainPine v3.0 2013
AutoFact: basic helix-loop-helix (bHLH) -like [Oryza sativa Japonica Group] dbj|BAD19276.1| basic helix-loop-helix (bHLH) -like [Oryza sativa Japonica Group] 2.00386e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: BHLH transcription factor 1.276e-20
Putative Complete
sp_v3.0_unigene34291 SustainPine v3.0 683
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene34343 SustainPine v3.0 629
AutoFact: Glucan synthase like 3 n=2 Tax=Selaginella moellendorffii RepID=D8QQF0_SELML 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 1,3-beta-glucan synthase 1.93239e-42
N-terminus
sp_v3.0_unigene34373 SustainPine v3.0 591
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene34438 SustainPine v3.0 495
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9R8H7_RICCO 9.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 1.542e-06
Internal
sp_v3.0_unigene34655 SustainPine v3.0 861
AutoFact: wound-inducible carboxypeptidase [Solanum lycopersicum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine carboxypeptidase, putative 2.006e-27
C-terminus
sp_v3.0_unigene34684 SustainPine v3.0 688
AutoFact: PHD domain containing protein 2.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: PHD finger protein 3.122e-33
C-terminus
sp_v3.0_unigene34736 SustainPine v3.0 1341
AutoFact: No apical meristem-like protein (Fragment) n=1 Tax=Picea sitchensis RepID=E0ZFA1_PICSI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: NAC domain protein, IPR003441 5.192e-19
Putative Complete
sp_v3.0_unigene34795 SustainPine v3.0 1733
AutoFact: Glycosyl transferase, family 48 [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 1,3-beta-glucan synthase 3.3407e-42
Complete
sp_v3.0_unigene34892 SustainPine v3.0 2215
AutoFact: putative nucleic acid binding protein [Platanus x acerifolia] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Poly(RC)-binding protein, putative 1.486e-07
Complete
sp_v3.0_unigene34899 SustainPine v3.0 1783
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9R809_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain