Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Pentatricopeptide repeat

Term: IPR002885  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene24689 SustainPine v3.0 756
AutoFact: Ribosomal protein L15 n=1 Tax=Georissus sp. APV-2005 RepID=Q4GXI3_9COLE 0.0
FL-Next: sp=Ribosomal protein L15; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L15 0.0
Complete
sp_v3.0_unigene24725 SustainPine v3.0 1765
AutoFact: putative lysophosphatidic acid acyltransferase [Oryza sativa Japonica Group] gb|EAY79072.1| hypothetical protein OsI_34182 [Oryza sativa Indica Group] gb|EAZ16559.1| hypothetical protein OsJ_32032 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic; Brassica napus (Rape). 0.0
Complete
sp_v3.0_unigene24760 SustainPine v3.0 1826
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q3ECH5.1|PP107_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g66345, mitochondrial; Flags: Precursor gb|AEE34498.1| pentatricopeptide repeat-containing protein [Ara 0.0
FL-Next: sp=Pentatricopeptide repeat-containing protein At1g66345, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete
sp_v3.0_unigene24813 SustainPine v3.0 805
AutoFact: Kinesin, motor region n=1 Tax=Medicago truncatula RepID=Q2HU33_MEDTR 4.00001e-41
FL-Next: sp=Probable 125 kDa kinesin-related protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Bipolar kinesin KRP-130, putative 4.197e-12
N-terminus
sp_v3.0_unigene25049 SustainPine v3.0 677
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9ZQF1.1|PP152_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g15630, mitochondrial; Flags: Precursor gb|AAD17407.1| putative salt-inducible protein [Arabidopsis tha 3.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 7.456e-07
C-terminus
sp_v3.0_unigene25262 SustainPine v3.0 683
AutoFact: Pentatricopeptide repeat-containing protein, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9RPX5_RICCO 1.00053e-42
FL-Next: sp=Pentatricopeptide repeat-containing protein At5g04810, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene25428 SustainPine v3.0 1078
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010 dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana] gb|AEE75762.1| pentatricopeptide 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene25690 SustainPine v3.0 440
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g30700; AltName: Full=Protein DYW9 emb|CAB52443.1| putative protein [Arabidopsis thaliana] emb|CAB79788 8.99999e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat protein 0.0
C-terminus
sp_v3.0_unigene25829 SustainPine v3.0 614
AutoFact: uncharacterized protein [Arabidopsis thaliana] sp|Q67XX3.1|FB252_ARATH RecName: Full=F-box protein At5g06550 dbj|BAD43165.1| putative protein [Arabidopsis thaliana] dbj|BAD44458.1| putative protein [Arabidopsis thaliana] gb|AED91033.1| uncharacterized pro 3.0e-24
FL-Next: Isoform 2 of F-box protein At5g06550 OS=Arabidopsis thaliana GN=At5g06550 0.0
N-terminus
sp_v3.0_unigene26184 SustainPine v3.0 318
AutoFact: Formamidase n=1 Tax=Lupinus albus RepID=B9VXW6_LUPAL 4.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative formamidase 7.196e-09
Internal
sp_v3.0_unigene26215 SustainPine v3.0 451
AutoFact: Ribosomal protein S3e n=2 Tax=Coleoptera RepID=Q4GXR1_SCALT 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S3 1.019e-10
N-terminus
sp_v3.0_unigene26311 SustainPine v3.0 1894
AutoFact: CBL-interacting serine/threonine-protein kinase, putative n=1 Tax=Ricinus communis RepID=B9S009_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: CBL-interacting serine/threonine-protein kinase, putative 1.347e-34
Putative Complete
sp_v3.0_unigene26319 SustainPine v3.0 544
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9FH87.1|PP447_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At5g65820 dbj|BAB09050.1| unnamed protein product [Arabidopsis thaliana] gb|AED98111.1| pentatric 1.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein At3g49730 7.797e-06
C-terminus
sp_v3.0_unigene26458 SustainPine v3.0 752
AutoFact: 60S ribosomal protein L15-1 n=8 Tax=Embryophyta RepID=RL15A_PICMA 0.0
FL-Next: sp=Ribosomal protein L15; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L15 0.0
Complete
sp_v3.0_unigene26471 SustainPine v3.0 267
AutoFact: Ribosomal protein L15 n=1 Tax=Pfiesteria piscicida RepID=E8Z6E0_PFIPI 8.0e-19
FL-Next: sp=Ribosomal protein L15; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L15 0.0
C-terminus
sp_v3.0_unigene26753 SustainPine v3.0 832
AutoFact: GTP-binding protein alpha subunit, gna, putative n=1 Tax=Ricinus communis RepID=B9T5D0_RICCO 1.00053e-42
FL-Next: tr=GTP-binding protein alpha subunit, gna, putative; Ricinus communis (Castor bean). 0.0
Sma3: GTP-binding protein alpha subunit, gna, putative 3.67e-08
Internal
sp_v3.0_unigene27005 SustainPine v3.0 424
AutoFact: Nodulin MtN3-like protein [Arabidopsis thaliana] sp|Q8L9J7.1|SWET1_ARATH RecName: Full=Bidirectional sugar transporter SWEET1; Short=AtSWEET1 gb|AAM65929.1| unknown [Arabidopsis thaliana] gb|AAO42204.1| unknown protein [Arabidopsis thaliana] gb|AAO63896.1 3.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Seven-transmembrane-domain protein 1 1.997e-12
N-terminus
sp_v3.0_unigene27106 SustainPine v3.0 1238
AutoFact: nucleobase:cation symporter-1, NCS1 family [Arabidopsis thaliana] gb|AAK60307.1|AF385716_1 AT5g03560/F12E4 [Arabidopsis thaliana] gb|AAL87384.1| AT5g03560/F12E4 [Arabidopsis thaliana] gb|AED90626.1| nucleobase:cation symporter-1, NCS1 family [Arabidopsis 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene27133 SustainPine v3.0 432
AutoFact: Pentatricopeptide repeat protein (Fragment) n=1 Tax=Cycas revoluta RepID=B3U1U9_CYCRE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat protein 0.0
Putative C-terminus
sp_v3.0_unigene27693 SustainPine v3.0 974
AutoFact: Unassigned protein
FL-Next: sp=Pentatricopeptide repeat-containing protein At2g32230, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain