Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Pentatricopeptide repeat

Term: IPR002885  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene158789 SustainPine v3.0 276
AutoFact: Ribosomal protein L15 n=2 Tax=Acyrthosiphon pisum RepID=C4WS36_ACYPI 1.0e-16
FL-Next: sp=Ribosomal protein L15; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L15 2.446e-35
C-terminus
sp_v3.0_unigene158849 SustainPine v3.0 365
AutoFact: Similar to ribosomal protein S3 (Fragment) n=3 Tax=Laurasiatheria RepID=Q862Q2_BOVIN 4.06377e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative 40S ribosomal protein 2.822e-07
N-terminus
sp_v3.0_unigene159100 SustainPine v3.0 169
AutoFact: Kinesin-II motor protein n=1 Tax=Volvox carteri f. nagariensis RepID=D8UD54_VOLCA 8.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Kinesin-like protein 2.989e-19
Internal
sp_v3.0_unigene159386 SustainPine v3.0 307
AutoFact: Ribosomal protein L15 n=2 Tax=Selaginella moellendorffii RepID=D8QTX2_SELML 1.0e-32
FL-Next: sp=Ribosomal protein L15; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L15 0.0
Putative C-terminus
sp_v3.0_unigene159439 SustainPine v3.0 291
AutoFact: PREDICTED: similar to Tetratricopeptide-like helical n=1 Tax=Vitis vinifera RepID=UPI0001984A05 2.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative pentatricopeptide (PPR) repeat-containing protein 2.554e-11
C-terminus
sp_v3.0_unigene159445 SustainPine v3.0 391
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070 gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana] gb|AEC07259.1| pentatricopeptide repe 1.99965e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative pentatricopeptide (PPR) repeat-containing protein 4.908e-09
Putative C-terminus
sp_v3.0_unigene159524 SustainPine v3.0 424
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat protein 0.0
C-terminus
sp_v3.0_unigene159555 SustainPine v3.0 208
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SGQ6.2|PP126_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g76280 gb|AEE35818.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] 8.0e-09
FL-Next: sp=Pentatricopeptide repeat-containing protein At1g76280; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene159653 SustainPine v3.0 395
AutoFact: Formamidase FmdS n=10 Tax=Trichocomaceae RepID=Q4WIF6_ASPFU 5.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Formamidase 1.746e-09
Putative C-terminus
sp_v3.0_unigene159801 SustainPine v3.0 319
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g57430, chloroplastic; Flags: Precursor gb|AEE79654.1| pentatricopeptide repeat-containing protein [Ara 2.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat protein 0.0
Putative C-terminus
sp_v3.0_unigene160065 SustainPine v3.0 478
AutoFact: JmjC domain containing protein 5.0e-12
FL-Next: sp=F-box protein At5g06550; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene160334 SustainPine v3.0 196
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9FFE3.1|PP388_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16420, mitochondrial; Flags: Precursor dbj|BAB09609.1| salt-inducible protein-like [Arabidopsis thalia 2.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene160368 SustainPine v3.0 375
AutoFact: pfam12854, PPR_1, PPR repeat 1.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene160412 SustainPine v3.0 392
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9C9U0.1|PP118_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g73710 gb|AAG52063.1|AC012679_1 hypothetical protein; 49134-52109 [Arabidopsis thaliana] gb|AEE35500.1| 9.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene160442 SustainPine v3.0 189
AutoFact: Pentatricopeptide repeat protein (Fragment) n=1 Tax=Picea abies RepID=B3U1V0_PICAB 2.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat protein 5.42e-11
Internal
sp_v3.0_unigene160517 SustainPine v3.0 405
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat protein 0.0
C-terminus
sp_v3.0_unigene160551 SustainPine v3.0 356
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gb|ABO38792.1| At1g74900 [Arabidopsis thaliana] gb|AEE35645.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] 1.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene160592 SustainPine v3.0 412
AutoFact: RecName: Full=Alpha-amylase isozyme 3D; AltName: Full=1,4-alpha-D-glucan glucanohydrolase; Flags: Precursor dbj|BAD09375.1| alpha-amylase isozyme 3D precursor [Oryza sativa Japonica Group] dbj|BAD09335.1| alpha-amylase isozyme 3D precursor [Oryza sativa J 3.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Alpha-amylase 0.0
Internal
sp_v3.0_unigene160619 SustainPine v3.0 413
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9T5G9_RICCO 5.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 4.274e-14
Putative N-terminus
sp_v3.0_unigene160623 SustainPine v3.0 520
AutoFact: NAC domain-containing protein 8 [Arabidopsis thaliana] sp|Q6NQK2.1|NAC8_ARATH RecName: Full=NAC domain-containing protein 8; Short=ANAC008 gb|AAQ62870.1| At1g25580 [Arabidopsis thaliana] dbj|BAD93935.1| hypothetical protein [Arabidopsis thaliana] dbj|BAF0 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: NAC domain protein, IPR003441 2.525e-19
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain