Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Pentatricopeptide repeat

Term: IPR002885  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene155438 SustainPine v3.0 325
• AutoFact: 40S ribosomal protein S3-3 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NDL2_PHYIT 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3 8.7e-11
Internal
sp_v3.0_unigene155923 SustainPine v3.0 477
• AutoFact: 60S ribosomal protein L151 putative n=1 Tax=Albugo laibachii Nc14 RepID=F0WIA3_9STRA 5.00264e-43
• FL-Next: sp=Ribosomal protein L15; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L15 0.0
C-terminus
sp_v3.0_unigene156005 SustainPine v3.0 427
• AutoFact: Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 n=1 Tax=Populus trichocarpa RepID=MTBC_POPTR 2.0e-29
• FL-Next: sp=Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1; subsp. trichocarpa). 0.0
C-terminus
sp_v3.0_unigene156294 SustainPine v3.0 223
• AutoFact: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [Arabidopsis thaliana] emb|CAB82945.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gb|AAM53340.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gb|AAQ56774 4.0e-24
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene156427 SustainPine v3.0 439
• AutoFact: Ribosomal protein L15 n=4 Tax=Paramecium tetraurelia RepID=A0BVY0_PARTE 4.00001e-41
• FL-Next: sp=Ribosomal protein L15; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L15 0.0
Putative C-terminus
sp_v3.0_unigene156530 SustainPine v3.0 540
• AutoFact: ADP-ribosylation factor-like protein 8 n=2 Tax=Dictyostelium RepID=ARL8_DICDI 1.00053e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Arl8-family small GTPase 3.384e-13
Complete
sp_v3.0_unigene156685 SustainPine v3.0 394
• AutoFact: ADP-ribosylation factor-like protein 8B [Homo sapiens] ref|NP_080287.1| ADP-ribosylation factor-like protein 8B [Mus musculus] ref|NP_001019503.1| ADP-ribosylation factor-like protein 8B [Rattus norvegicus] ref|NP_001156031.1| ADP-ribosylation factor-like 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Arl8-family small GTPase 4.227e-13
Putative N-terminus
sp_v3.0_unigene157003 SustainPine v3.0 225
• AutoFact: Putative 40S ribosomal protein RPS3 (Fragment) n=1 Tax=Flustra foliacea RepID=A9UDN1_9BILA 1.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3 1.183e-10
Internal
sp_v3.0_unigene157007 SustainPine v3.0 499
• AutoFact: Ribosomal protein L15 n=2 Tax=Selaginella moellendorffii RepID=D8QTX2_SELML 0.0
• FL-Next: sp=Ribosomal protein L15; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L15 0.0
C-terminus
sp_v3.0_unigene157153 SustainPine v3.0 215
• AutoFact: pentatricopeptide, putative [Oryza sativa Japonica Group] 4.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide, putative 4.095e-08
Internal
sp_v3.0_unigene157630 SustainPine v3.0 335
• AutoFact: Calreticulin n=1 Tax=Polysphondylium pallidum RepID=D3BIF1_POLPA 6.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Calreticulin 2.52234e-44
Internal
sp_v3.0_unigene157745 SustainPine v3.0 292
• AutoFact: 40S ribosomal protein S3, putative n=3 Tax=rosids RepID=B9RK17_RICCO 9.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3, putative 2.159e-08
N-terminus
sp_v3.0_unigene158107 SustainPine v3.0 365
• AutoFact: Ribosomal protein L15 n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9C7N9_9EUKA 2.0e-36
• FL-Next: sp=Ribosomal protein L15; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L15 0.0
N-terminus
sp_v3.0_unigene158253 SustainPine v3.0 412
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9STF9.1|PP266_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g46870 emb|CAB51178.1| putative protein [Arabidopsis thaliana] dbj|BAC42475.1| unknown protein [Arabido 3.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: cDNA clone:J013037G15, full insert sequence 6.823e-06
Internal
sp_v3.0_unigene158313 SustainPine v3.0 324
• AutoFact: Ribosomal protein 3 small subunit (Fragment) n=1 Tax=Platynereis dumerilii RepID=Q2N1A9_PLADU 2.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3 1.183e-10
C-terminus
sp_v3.0_unigene158437 SustainPine v3.0 533
• AutoFact: signal peptidase I [Aedes aegypti] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: S24-like peptidase 7.738e-09
Putative N-terminus
sp_v3.0_unigene158461 SustainPine v3.0 292
• AutoFact: polygalacturonase PG1-like [Oryza sativa Japonica Group] dbj|BAD68939.1| polygalacturonase PG1-like [Oryza sativa Japonica Group] 7.0e-35
• FL-Next: sp=Polygalacturonase; Juniperus ashei (Ozark white cedar). 0.0
• Sma3: Polygalacturonase 8.815e-16
Internal
sp_v3.0_unigene158471 SustainPine v3.0 453
• AutoFact: ARF-like protein n=1 Tax=Polysphondylium pallidum RepID=D3BAL9_POLPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Arl8-family small GTPase 5.294e-13
N-terminus
sp_v3.0_unigene158504 SustainPine v3.0 353
• AutoFact: AAA ATPase domain-containing protein n=1 Tax=Polysphondylium pallidum RepID=D3BKR2_POLPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cell division cycle protein 48 1.285e-11
Internal
sp_v3.0_unigene158574 SustainPine v3.0 286
• AutoFact: Plasma membrane H+ ATPase n=2 Tax=Poaceae RepID=Q8L6I0_ORYSJ 4.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Plasma membrane H+-ATPase 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain