Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Pentatricopeptide repeat

Term: IPR002885  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene149810 SustainPine v3.0 328
• AutoFact: Ankyrin; Pentatricopeptide repeat [Medicago truncatula] 6.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative pentatricopeptide (PPR) repeat-containing protein 5.235e-14
Internal
sp_v3.0_unigene149834 SustainPine v3.0 230
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750 gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana] emb|CAB77760.1| hypothetical protein 1.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene149949 SustainPine v3.0 221
• AutoFact: Os02g0151000 protein n=3 Tax=Oryza sativa RepID=Q67UW7_ORYSJ 8.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: EMB2261 putative 6.002e-07
N-terminus
sp_v3.0_unigene150501 SustainPine v3.0 453
• AutoFact: Ribosomal protein L15 n=1 Tax=Tetrahymena thermophila SB210 RepID=Q22A30_TETTH 0.0
• FL-Next: sp=Ribosomal protein L15; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L15 0.0
C-terminus
sp_v3.0_unigene150746 SustainPine v3.0 397
• AutoFact: Ribosomal protein L15 n=1 Tax=Chlorella variabilis RepID=E1ZLE6_9CHLO 3.9937e-43
• FL-Next: sp=Ribosomal protein L15; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L15 0.0
C-terminus
sp_v3.0_unigene150815 SustainPine v3.0 367
• AutoFact: Ribosomal protein L15 n=1 Tax=Pfiesteria piscicida RepID=E8Z6E0_PFIPI 4.0e-30
• FL-Next: sp=Ribosomal protein L15; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L15 0.0
C-terminus
sp_v3.0_unigene150831 SustainPine v3.0 414
• AutoFact: Glutamyl-tRNA Synthetase n=1 Tax=Ectocarpus siliculosus RepID=D7FN57_ECTSI 5.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene150895 SustainPine v3.0 438
• AutoFact: Ribosomal protein L15 n=2 Tax=Selaginella moellendorffii RepID=D8QTX2_SELML 0.0
• FL-Next: sp=Ribosomal protein L15; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L15 0.0
C-terminus
sp_v3.0_unigene151257 SustainPine v3.0 433
• AutoFact: Transmembrane protein TPARL, putative n=1 Tax=Ectocarpus siliculosus RepID=D7FN76_ECTSI 9.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Predicted membrane protein 1.724e-07
C-terminus
sp_v3.0_unigene151734 SustainPine v3.0 259
• AutoFact: 40S ribosomal protein S3 [Oryza sativa Indica Group] 4.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3 1.183e-10
Internal
sp_v3.0_unigene151757 SustainPine v3.0 246
• AutoFact: 40S ribosomal protein S3, putative n=3 Tax=rosids RepID=B9RK17_RICCO 6.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3 1.183e-10
Putative C-terminus
sp_v3.0_unigene152346 SustainPine v3.0 343
• AutoFact: 40S ribosomal protein S3 (Fragment) n=7 Tax=Ophiostomataceae RepID=F2XM78_9PEZI 5.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3 1.183e-10
Putative C-terminus
sp_v3.0_unigene153063 SustainPine v3.0 534
• AutoFact: 40S ribosomal protein S3-1 [Arabidopsis thaliana] sp|Q9SIP7.1|RS31_ARATH RecName: Full=40S ribosomal protein S3-1 gb|AAK55690.1|AF378887_1 At2g31610/T9H9.13 [Arabidopsis thaliana] gb|AAD24852.1| 40S ribosomal protein; contains C-terminal domain [Arabidops 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3 1.377e-10
Internal
sp_v3.0_unigene153076 SustainPine v3.0 547
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene153361 SustainPine v3.0 392
• AutoFact: DUF659 domain containing protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: HAT dimerisation domain-containing protein-like 3.556e-07
Putative N-terminus
sp_v3.0_unigene153516 SustainPine v3.0 354
• AutoFact: ribosomal protein S3 [Lethenteron japonicum] 7.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative 40S ribosomal protein 2.625e-07
Internal
sp_v3.0_unigene154420 SustainPine v3.0 337
• AutoFact: Plasma membrane H+-ATPase n=1 Tax=Daucus carota RepID=Q75N98_DAUCA 5.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Plasma membrane H+-ATPase 0.0
Internal
sp_v3.0_unigene154658 SustainPine v3.0 502
• AutoFact: Flap endonuclease 1 n=3 Tax=Clupeocephala RepID=FEN1A_DANRE 0.0
• FL-Next: sp=Flap endonuclease 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Flap endonuclease 1a 6.823e-09
Internal
sp_v3.0_unigene155189 SustainPine v3.0 229
• AutoFact: Ribosomal protein L15 n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4RTJ1_OSTLU 9.0e-11
• FL-Next: sp=Ribosomal protein L15; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L15 9.52182e-42
C-terminus
sp_v3.0_unigene155206 SustainPine v3.0 330
• AutoFact: Signal peptidase complex catalytic subunit (Fragment) n=1 Tax=Ascaris suum RepID=F1LGI8_ASCSU 7.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain