Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Pseudouridine synthase, RsuA and RluB/C/D/E/F

Term: IPR006145  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene2927 SustainPine v3.0 1831
• AutoFact: suppressor of variegation1 causing pseudouridine synthase-like protein [Arabidopsis thaliana] gb|AAM66944.1| unknown [Arabidopsis thaliana] dbj|BAC42334.1| unknown protein [Arabidopsis thaliana] gb|AEC09639.1| suppressor of variegation1 causing pseudourid 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Complete
sp_v3.0_unigene9538 SustainPine v3.0 1589
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene10945 SustainPine v3.0 344
• AutoFact: RNA pseudourine synthase 3, mitochondrial n=3 Tax=Arabidopsis RepID=PUS3_ARATH 1.0e-19
• FL-Next: Isoform 2 of RNA pseudourine synthase 3, mitochondrial OS=Arabidopsis thaliana GN=At1g78910 0.0
C-terminus
sp_v3.0_unigene12592 SustainPine v3.0 1748
• AutoFact: RNA pseudourine synthase 5 [Arabidopsis thaliana] sp|Q5M721.2|PUS5_ARATH RecName: Full=RNA pseudourine synthase 5; AltName: Full=RNA pseudouridylate synthase 5; AltName: Full=RNA-uridine isomerase 5 gb|AEE78921.1| RNA pseudourine synthase 5 [Arabidopsis t 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA-uridine isomerase 5 1.988e-09
Complete
sp_v3.0_unigene14206 SustainPine v3.0 882
• AutoFact: RNA pseudourine synthase 6 [Arabidopsis thaliana] sp|Q9SVS0.1|PUS6_ARATH RecName: Full=RNA pseudourine synthase 6, chloroplastic; AltName: Full=RNA pseudouridylate synthase 6; AltName: Full=RNA-uridine isomerase 6; Flags: Precursor emb|CAB36821.1| hypothe 0.0
• FL-Next: sp=RNA pseudourine synthase 6, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: RNA-uridine isomerase 6 8.693e-10
C-terminus
sp_v3.0_unigene14483 SustainPine v3.0 454
• AutoFact: putative ribosomal large subunit pseudouridine synthase C protein [Oryza sativa Japonica Group] dbj|BAD10435.1| putative ribosomal large subunit pseudouridine synthase C protein [Oryza sativa Japonica Group] 7.0e-31
• FL-Next: sp=RNA pseudourine synthase 3, mitochondrial; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: RNA-uridine isomerase 3 1.656e-09
Putative C-terminus
sp_v3.0_unigene14510 SustainPine v3.0 411
• AutoFact: RNA pseudourine synthase 6 [Arabidopsis thaliana] sp|Q9SVS0.1|PUS6_ARATH RecName: Full=RNA pseudourine synthase 6, chloroplastic; AltName: Full=RNA pseudouridylate synthase 6; AltName: Full=RNA-uridine isomerase 6; Flags: Precursor emb|CAB36821.1| hypothe 6.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA-uridine isomerase 6 9.576e-10
Internal
sp_v3.0_unigene25495 SustainPine v3.0 1271
• AutoFact: Ribosomal pseudouridine synthase, putative n=1 Tax=Ricinus communis RepID=B9RFI4_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene35140 SustainPine v3.0 1359
• AutoFact: RNA pseudourine synthase 2 [Arabidopsis thaliana] sp|Q3ECD0.1|PUS2_ARATH RecName: Full=RNA pseudourine synthase 2, chloroplastic; AltName: Full=RNA pseudouridylate synthase 2; AltName: Full=RNA-uridine isomerase 2; Flags: Precursor gb|AEE35790.1| RNA pseu 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA-uridine isomerase 2 4.622e-09
C-terminus
sp_v3.0_unigene38880 SustainPine v3.0 772
• AutoFact: RNA pseudourine synthase 7 [Arabidopsis thaliana] sp|Q9LU60.1|PUS7_ARATH RecName: Full=RNA pseudourine synthase 7; AltName: Full=RNA pseudouridylate synthase 7; AltName: Full=RNA-uridine isomerase 7 dbj|BAA97376.1| unnamed protein product [Arabidopsis tha 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA-uridine isomerase 7 2.258e-09
Internal
sp_v3.0_unigene39804 SustainPine v3.0 683
• AutoFact: RNA pseudourine synthase 6 [Arabidopsis thaliana] sp|Q9SVS0.1|PUS6_ARATH RecName: Full=RNA pseudourine synthase 6, chloroplastic; AltName: Full=RNA pseudouridylate synthase 6; AltName: Full=RNA-uridine isomerase 6; Flags: Precursor emb|CAB36821.1| hypothe 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA-uridine isomerase 6 9.576e-10
Putative C-terminus
sp_v3.0_unigene41275 SustainPine v3.0 500
• AutoFact: RNA pseudourine synthase 3, mitochondrial n=3 Tax=Arabidopsis RepID=PUS3_ARATH 1.0e-21
• FL-Next: Isoform 2 of RNA pseudourine synthase 3, mitochondrial OS=Arabidopsis thaliana GN=At1g78910 0.0
• Sma3: RNA-uridine isomerase 3 4.494e-10
C-terminus
sp_v3.0_unigene45812 SustainPine v3.0 524
• AutoFact: RNA pseudourine synthase 7 [Arabidopsis thaliana] sp|Q9LU60.1|PUS7_ARATH RecName: Full=RNA pseudourine synthase 7; AltName: Full=RNA pseudouridylate synthase 7; AltName: Full=RNA-uridine isomerase 7 dbj|BAA97376.1| unnamed protein product [Arabidopsis tha 1.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene48077 SustainPine v3.0 425
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene58583 SustainPine v3.0 249
• AutoFact: putative ribosomal large subunit pseudouridine synthase C protein [Oryza sativa Japonica Group] dbj|BAD10435.1| putative ribosomal large subunit pseudouridine synthase C protein [Oryza sativa Japonica Group] 8.0e-25
• FL-Next: sp=RNA pseudourine synthase 3, mitochondrial; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: RNA-uridine isomerase 3 1.777e-09
Internal
sp_v3.0_unigene59113 SustainPine v3.0 205
• AutoFact: RNA pseudourine synthase 7 [Arabidopsis thaliana] sp|Q9LU60.1|PUS7_ARATH RecName: Full=RNA pseudourine synthase 7; AltName: Full=RNA pseudouridylate synthase 7; AltName: Full=RNA-uridine isomerase 7 dbj|BAA97376.1| unnamed protein product [Arabidopsis tha 2.0e-15
• FL-Next: sp=RNA pseudourine synthase 7; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: RNA-uridine isomerase 7 1.318e-09
Internal
sp_v3.0_unigene63564 SustainPine v3.0 133
• AutoFact: RNA pseudourine synthase 6 [Arabidopsis thaliana] sp|Q9SVS0.1|PUS6_ARATH RecName: Full=RNA pseudourine synthase 6, chloroplastic; AltName: Full=RNA pseudouridylate synthase 6; AltName: Full=RNA-uridine isomerase 6; Flags: Precursor emb|CAB36821.1| hypothe 1.0e-07
• FL-Next: Isoform 2 of RNA pseudourine synthase 6, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0660400 0.0
• Sma3: RNA-uridine isomerase 6 7.054e-10
Internal
sp_v3.0_unigene69028 SustainPine v3.0 186
• AutoFact: Ribosomal pseudouridine synthase, putative n=1 Tax=Ricinus communis RepID=B9RFI4_RICCO 3.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA-uridine isomerase 1 6.546e-10
Internal
sp_v3.0_unigene70634 SustainPine v3.0 225
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene72376 SustainPine v3.0 197
• AutoFact: RNA pseudourine synthase 2 [Arabidopsis thaliana] sp|Q3ECD0.1|PUS2_ARATH RecName: Full=RNA pseudourine synthase 2, chloroplastic; AltName: Full=RNA pseudouridylate synthase 2; AltName: Full=RNA-uridine isomerase 2; Flags: Precursor gb|AEE35790.1| RNA pseu 1.0e-10
• FL-Next: sp=RNA pseudourine synthase 2, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain