Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Pseudouridine synthase, RsuA and RluB/C/D/E/F

Term: IPR006145  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene74282 SustainPine v3.0 408
• AutoFact: Pseudouridine synthase family protein n=3 Tax=Arabidopsis RepID=D7LCF4_ARALL 1.0e-21
• FL-Next: tr=Pseudouridine synthase family protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Internal
sp_v3.0_unigene78583 SustainPine v3.0 257
• AutoFact: putative ribosomal large subunit pseudouridine synthase C protein [Oryza sativa Japonica Group] dbj|BAD10435.1| putative ribosomal large subunit pseudouridine synthase C protein [Oryza sativa Japonica Group] 5.0e-13
• FL-Next: sp=RNA pseudourine synthase 3, mitochondrial; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene78632 SustainPine v3.0 255
• AutoFact: RNA pseudourine synthase 6 [Arabidopsis thaliana] sp|Q9SVS0.1|PUS6_ARATH RecName: Full=RNA pseudourine synthase 6, chloroplastic; AltName: Full=RNA pseudouridylate synthase 6; AltName: Full=RNA-uridine isomerase 6; Flags: Precursor emb|CAB36821.1| hypothe 5.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA-uridine isomerase 6 9.576e-10
C-terminus
sp_v3.0_unigene93551 SustainPine v3.0 1099
• AutoFact: RNA pseudourine synthase 5 [Arabidopsis thaliana] sp|Q5M721.2|PUS5_ARATH RecName: Full=RNA pseudourine synthase 5; AltName: Full=RNA pseudouridylate synthase 5; AltName: Full=RNA-uridine isomerase 5 gb|AEE78921.1| RNA pseudourine synthase 5 [Arabidopsis t 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA-uridine isomerase 5 1.988e-09
C-terminus
sp_v3.0_unigene94269 SustainPine v3.0 665
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene95119 SustainPine v3.0 571
• AutoFact: RNA pseudourine synthase 4 [Arabidopsis thaliana] sp|Q9LT72.1|PUS4_ARATH RecName: Full=RNA pseudourine synthase 4, mitochondrial; AltName: Full=RNA pseudouridylate synthase 4; AltName: Full=RNA-uridine isomerase 4; Flags: Precursor dbj|BAB02469.1| unnamed 1.99965e-42
• FL-Next: sp=RNA pseudourine synthase 4, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: RNA-uridine isomerase 4 2.745e-09
Internal
sp_v3.0_unigene103657 SustainPine v3.0 409
• AutoFact: RNA pseudourine synthase 7 [Arabidopsis thaliana] sp|Q9LU60.1|PUS7_ARATH RecName: Full=RNA pseudourine synthase 7; AltName: Full=RNA pseudouridylate synthase 7; AltName: Full=RNA-uridine isomerase 7 dbj|BAA97376.1| unnamed protein product [Arabidopsis tha 2.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene104067 SustainPine v3.0 488
• AutoFact: RNA pseudourine synthase 7 [Arabidopsis thaliana] sp|Q9LU60.1|PUS7_ARATH RecName: Full=RNA pseudourine synthase 7; AltName: Full=RNA pseudouridylate synthase 7; AltName: Full=RNA-uridine isomerase 7 dbj|BAA97376.1| unnamed protein product [Arabidopsis tha 1.99993e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA-uridine isomerase 7 1.818e-09
Internal
sp_v3.0_unigene105547 SustainPine v3.0 705
• AutoFact: RNA pseudourine synthase 2, chloroplastic n=2 Tax=Oryza sativa RepID=PUS2_ORYSJ 2.8026e-45
• FL-Next: sp=RNA pseudourine synthase 2, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: RNA-uridine isomerase 2 3.506e-09
N-terminus
sp_v3.0_unigene115958 SustainPine v3.0 335
• AutoFact: Isovaleryl-CoA dehydrogenase n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NEH1_COPC7 2.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Isovaleryl-CoA dehydrogenase 1.093e-08
C-terminus
sp_v3.0_unigene120927 SustainPine v3.0 352
• AutoFact: Ribosomal pseudouridine synthase, putative n=1 Tax=Ricinus communis RepID=B9SLG9_RICCO 1.0e-30
• FL-Next: sp=RNA pseudourine synthase 3, mitochondrial; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: RNA-uridine isomerase 3 5.586e-10
Internal
sp_v3.0_unigene137607 SustainPine v3.0 265
• AutoFact: RNA pseudourine synthase 7 [Arabidopsis thaliana] sp|Q9LU60.1|PUS7_ARATH RecName: Full=RNA pseudourine synthase 7; AltName: Full=RNA pseudouridylate synthase 7; AltName: Full=RNA-uridine isomerase 7 dbj|BAA97376.1| unnamed protein product [Arabidopsis tha 4.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA-uridine isomerase 7 9.88e-10
Putative C-terminus
sp_v3.0_unigene157995 SustainPine v3.0 491
• AutoFact: Isovaleryl-CoA dehydrogenase [Reinekea sp. MED297] gb|EAR11042.1| Isovaleryl-CoA dehydrogenase [Reinekea sp. MED297] 4.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene162327 SustainPine v3.0 280
• AutoFact: suppressor of variegation1 causing pseudouridine synthase-like protein [Arabidopsis thaliana] gb|AAM66944.1| unknown [Arabidopsis thaliana] dbj|BAC42334.1| unknown protein [Arabidopsis thaliana] gb|AEC09639.1| suppressor of variegation1 causing pseudourid 5.0e-11
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene167604 SustainPine v3.0 162
• AutoFact: RNA pseudourine synthase 1 [Arabidopsis thaliana] sp|Q7XA65.1|PUS1_ARATH RecName: Full=RNA pseudourine synthase 1; AltName: Full=RNA pseudouridylate synthase 1; AltName: Full=RNA-uridine isomerase 1 gb|AAQ22669.1| At1g56345 [Arabidopsis thaliana] dbj|BAF0 1.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene191194 SustainPine v3.0 460
• AutoFact: Isovaleryl-CoA dehydrogenase, mitochondrial n=3 Tax=Arabidopsis RepID=IVD_ARATH 5.60519e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Isovaleryl-CoA dehydrogenase 1.186e-08
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain