Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Translation elongation factor EF1A, eukaryotic/archaeal

Term: IPR004539  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene75854 SustainPine v3.0 467
• AutoFact: Elongation factor 1-alpha n=178 Tax=Eukaryota RepID=EF1A_PIRIN 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 0.0
Putative Complete
sp_v3.0_unigene75942 SustainPine v3.0 269
• AutoFact: translation elongation factor-1 alpha [Pseudotsuga menziesii var. menziesii] gb|AAV92326.1| translation elongation factor-1 alpha [Pseudotsuga menziesii var. menziesii] gb|AAV92327.1| translation elongation factor-1 alpha [Pseudotsuga menziesii var. menzi 9.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 0.0
C-terminus
sp_v3.0_unigene76030 SustainPine v3.0 301
• AutoFact: Elongation factor 1 alpha (Fragment) n=3 Tax=Eukaryota RepID=A7J577_9LECA 1.99993e-41
• FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 9.927e-22
Internal
sp_v3.0_unigene76803 SustainPine v3.0 397
• AutoFact: Translation elongation factor 1-alpha (Fragment) n=3 Tax=Saccharomycetales RepID=A9QAA2_9ASCO 0.0
• FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 9.992e-33
Internal
sp_v3.0_unigene77038 SustainPine v3.0 140
• AutoFact: Elongation factor 1-alpha-like protein (Fragment) n=6 Tax=Spermatophyta RepID=D3G8A2_LOLPR 2.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 0.0
Internal
sp_v3.0_unigene77187 SustainPine v3.0 250
• AutoFact: translation elongation factor-1 alpha [Pseudotsuga menziesii var. menziesii] gb|AAV92326.1| translation elongation factor-1 alpha [Pseudotsuga menziesii var. menziesii] gb|AAV92327.1| translation elongation factor-1 alpha [Pseudotsuga menziesii var. menzi 5.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 0.0
Putative N-terminus
sp_v3.0_unigene77204 SustainPine v3.0 217
• AutoFact: Translation elongation factor 1A-like protein (Fragment) n=1 Tax=Reticulomyxa filosa RepID=B5A4Q1_RETFI 3.0e-26
• FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor-like 4.336e-32
Internal
sp_v3.0_unigene78369 SustainPine v3.0 223
• AutoFact: translation elongation factor-1 alpha [Pseudotsuga menziesii var. menziesii] gb|AAV92326.1| translation elongation factor-1 alpha [Pseudotsuga menziesii var. menziesii] gb|AAV92327.1| translation elongation factor-1 alpha [Pseudotsuga menziesii var. menzi 1.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 0.0
Putative N-terminus
sp_v3.0_unigene78801 SustainPine v3.0 85
• AutoFact: elongation factor alpha7 [Zea mays] gb|AAF42981.1| elongation factor 1 alpha [Zea mays] 1.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 4.983e-12
Putative C-terminus
sp_v3.0_unigene79033 SustainPine v3.0 366
• AutoFact: Elongation factor 1-alpha (Fragment) n=1 Tax=Rimicaris exoculata RepID=D7F1R6_RIMEX 2.0e-26
• FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 3.186e-26
Internal
sp_v3.0_unigene79081 SustainPine v3.0 194
• AutoFact: translation elongation factor 1 alpha [Plantago major] 3.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 0.0
Misassembled
sp_v3.0_unigene79239 SustainPine v3.0 284
• AutoFact: translation elongation factor-1 alpha [Pseudotsuga menziesii var. menziesii] gb|AAV92326.1| translation elongation factor-1 alpha [Pseudotsuga menziesii var. menziesii] gb|AAV92327.1| translation elongation factor-1 alpha [Pseudotsuga menziesii var. menzi 3.0e-26
• FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 5.299e-36
Misassembled
sp_v3.0_unigene79934 SustainPine v3.0 250
• AutoFact: translation elongation factor-1 alpha [Pseudotsuga menziesii var. menziesii] gb|AAV92326.1| translation elongation factor-1 alpha [Pseudotsuga menziesii var. menziesii] gb|AAV92327.1| translation elongation factor-1 alpha [Pseudotsuga menziesii var. menzi 2.0e-29
• FL-Next: sp=Elongation factor 1-alpha; Glycine max (Soybean) (Glycine hispida). 0.0
• Sma3: Elongation factor 1-alpha 0.0
Internal
sp_v3.0_unigene79939 SustainPine v3.0 121
• AutoFact: Elongation factor 1-alpha n=1 Tax=Seculamonas ecuadoriensis RepID=C1K9U6_9EUKA 3.0e-09
• FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 7.44e-17
Internal
sp_v3.0_unigene80177 SustainPine v3.0 194
• AutoFact: translation elongation factor-1 alpha [Picea abies] 3.0e-12
• FL-Next: sp=Elongation factor 1-alpha; Euglena gracilis. 0.0
• Sma3: Elongation factor 1-alpha 1.313e-33
Internal
sp_v3.0_unigene80231 SustainPine v3.0 208
• AutoFact: Translation elongation factor 1-alpha (Fragment) n=3 Tax=Hypocreales RepID=A4U9K0_9HYPO 5.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 0.0
Internal
sp_v3.0_unigene80901 SustainPine v3.0 197
• AutoFact: Elongation factor 1-alpha n=193 Tax=Eukaryota RepID=EF1A_ARATH 4.0e-11
• FL-Next: sp=Elongation factor 1-alpha 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Translation elongation factor-1 alpha 8.356e-07
Internal
sp_v3.0_unigene81043 SustainPine v3.0 93
• AutoFact: translation elongation factor-1 alpha [Pseudotsuga menziesii var. menziesii] gb|AAV92326.1| translation elongation factor-1 alpha [Pseudotsuga menziesii var. menziesii] gb|AAV92327.1| translation elongation factor-1 alpha [Pseudotsuga menziesii var. menzi 6.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene81351 SustainPine v3.0 194
• AutoFact: Elongation factor 1-alpha (Fragment) n=1 Tax=Spirogyra sp. FWAC125 RepID=A6MWT3_9VIRI 7.0e-23
• FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 3.39e-31
Internal
sp_v3.0_unigene81451 SustainPine v3.0 186
• AutoFact: Elongation factor-1 alpha (Fragment) n=11 Tax=Triaenonychidae RepID=D7RGG5_9ARAC 5.0e-27
• FL-Next: sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 1-alpha 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain