Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Ribosomal protein L40e

Term: IPR001975  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene129421 SustainPine v3.0 211
AutoFact: Polyubiquitin n=2 Tax=Chlorophyta RepID=D8U995_VOLCA 1.0e-24
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Putative Complete
sp_v3.0_unigene129674 SustainPine v3.0 439
AutoFact: PREDICTED: similar to ubiquitin B precursor isoform 2 [Canis familiaris] 9.80909e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin, putative 4.441e-07
Putative N-terminus
sp_v3.0_unigene129895 SustainPine v3.0 280
AutoFact: Ubiquitin n=1 Tax=Coccidioides posadasii str. Silveira RepID=E9DIZ1_COCPS 2.0e-40
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Putative Complete
sp_v3.0_unigene130672 SustainPine v3.0 324
AutoFact: Putative ubiquitin C variant 2 n=1 Tax=Taeniopygia guttata RepID=B5G2P2_TAEGU 7.00649e-44
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Ubiquitin, putative 1.697e-10
Putative Complete
sp_v3.0_unigene130706 SustainPine v3.0 418
AutoFact: Polyubiquitin 4 UBQ4 n=1 Tax=Arabidopsis thaliana RepID=Q0WRN6_ARATH 5.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Misassembled
sp_v3.0_unigene131104 SustainPine v3.0 395
AutoFact: Polyubiquitin 4 UBQ4 n=1 Tax=Arabidopsis thaliana RepID=Q0WRN6_ARATH 9.0e-34
FL-Next: tr=Polyubiquitin; Pinus sylvestris (Scots pine). 0.0
Putative N-terminus
sp_v3.0_unigene131191 SustainPine v3.0 142
AutoFact: Ubiquitin-60S ribosomal protein L40 n=1 Tax=Trypanosoma cruzi RepID=RL402_TRYCR 1.0e-12
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Putative C-terminus
sp_v3.0_unigene131268 SustainPine v3.0 222
AutoFact: Polyubiquitin 4 UBQ4 n=1 Tax=Arabidopsis thaliana RepID=Q0WRN6_ARATH 4.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene131306 SustainPine v3.0 104
AutoFact: Polyubiquitin n=1 Tax=Lilium longiflorum RepID=Q9SEK7_LILLO 1.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene131504 SustainPine v3.0 271
AutoFact: ubiquitin [Aspergillus clavatus NRRL 1] gb|EAW09700.1| ubiquitin [Aspergillus clavatus NRRL 1] 1.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene131577 SustainPine v3.0 213
AutoFact: polyubiquitin [Triticum aestivum] 2.0e-21
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
N-terminus
sp_v3.0_unigene131623 SustainPine v3.0 401
AutoFact: ubiquitin [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Putative Complete
sp_v3.0_unigene131965 SustainPine v3.0 373
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_36.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=E0CU91_VITVI 1.0e-30
FL-Next: sp=Ubiquitin; Avena sativa (Oat). 0.0
Complete
sp_v3.0_unigene132563 SustainPine v3.0 236
AutoFact: Polyubiquitin 4 UBQ4 n=1 Tax=Arabidopsis thaliana RepID=Q0WRN6_ARATH 4.0e-27
FL-Next: sp=Ubiquitin; Avena sativa (Oat). 0.0
Complete
sp_v3.0_unigene132596 SustainPine v3.0 1008
AutoFact: polyubiquitin [Triticum aestivum] 0.0
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Bi-ubiquitin 1.803e-08
Complete
sp_v3.0_unigene132677 SustainPine v3.0 198
AutoFact: Polyubiquitin 14 n=9 Tax=core eudicotyledons RepID=UBQ14_ARATH 1.0e-15
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Putative N-terminus
sp_v3.0_unigene132695 SustainPine v3.0 275
AutoFact: Polyubiquitin 4 UBQ4 n=1 Tax=Arabidopsis thaliana RepID=Q0WRN6_ARATH 2.0e-30
FL-Next: tr=Polyubiquitin; Pinus sylvestris (Scots pine). 0.0
Putative N-terminus
sp_v3.0_unigene132889 SustainPine v3.0 228
AutoFact: Ubiquitin [Medicago truncatula] 9.0e-20
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Putative N-terminus
sp_v3.0_unigene135634 SustainPine v3.0 256
AutoFact: PREDICTED: ubiquitin A-52 residue ribosomal protein fusion product 1 n=1 Tax=Rattus norvegicus RepID=UPI0001CF4A0F 9.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene135668 SustainPine v3.0 139
AutoFact: Ubiquitin n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9CCU3_9EUKA 7.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain