Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: SWIB/MDM2 domain

Term: IPR003121  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene68853 SustainPine v3.0 168
AutoFact: SWIB/MDM2 domain-containing protein [Arabidopsis thaliana] gb|AAK44049.1|AF370234_1 unknown protein [Arabidopsis thaliana] gb|AAL15230.1| unknown protein [Arabidopsis thaliana] gb|AAM15040.1| Expressed protein [Arabidopsis thaliana] gb|AAM15113.1| Express 9.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein At2g35605/T20F21.29 3.899e-06
Putative C-terminus
sp_v3.0_unigene69032 SustainPine v3.0 255
AutoFact: SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana] gb|AAL24145.1| unknown protein [Arabidopsis thaliana] gb|AAM14205.1| unknown protein [Arabidopsis thaliana] gb|AEE84600.1| SWIB complex BAF60b domain-containing protein [Arabidopsis thal 9.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene72686 SustainPine v3.0 315
AutoFact: DNA binding / nucleic acid binding / protein binding / zinc ion binding 3.0e-18
FL-Next: sp=Zinc finger CCCH domain-containing protein 19; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene96880 SustainPine v3.0 478
AutoFact: Unassigned protein
FL-Next: sp=Zinc finger CCCH domain-containing protein 19; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene104752 SustainPine v3.0 483
AutoFact: SWIB/MDM2 and Plus-3 and GYF domain-containing protein [Arabidopsis thaliana] sp|Q9FT92.2|Y5843_ARATH RecName: Full=Uncharacterized protein At5g08430 gb|ACF06124.1| At5g08430 [Arabidopsis thaliana] gb|AED91300.1| SWIB/MDM2 and Plus-3 and GYF domain-contai 3.0e-23
FL-Next: sp=Zinc finger CCCH domain-containing protein 19; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene127346 SustainPine v3.0 537
AutoFact: SWIB/MDM2 domain containing protein n=3 Tax=Andropogoneae RepID=B6SZA4_MAIZE 2.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene128106 SustainPine v3.0 774
AutoFact: SWIb domain-containing protein (Fragment) n=1 Tax=Solanum chacoense RepID=Q6V9I4_SOLCH 2.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene142149 SustainPine v3.0 367
AutoFact: SWIB/MDM2 domain-containing protein [Arabidopsis thaliana] gb|AAF03473.1|AC009327_12 hypothetical protein [Arabidopsis thaliana] dbj|BAC42418.1| unknown protein [Arabidopsis thaliana] gb|AAO39929.1| At3g03590 [Arabidopsis thaliana] gb|AEE73960.1| SWIB/MDM 1.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein At2g35605/T20F21.29 9.747e-06
C-terminus
sp_v3.0_unigene144420 SustainPine v3.0 647
AutoFact: SWIb domain-containing protein [Solanum chacoense] 4.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene148137 SustainPine v3.0 490
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus elliottii RepID=O65863_PINEL 3.00004e-41
FL-Next: sp=Uncharacterized mitochondrial protein AtMg01250; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: RNA-directed DNA polymerase (Reverse transcriptase) 9.831e-10
Putative N-terminus
sp_v3.0_unigene148201 SustainPine v3.0 280
AutoFact: GYF domain containing protein 2.0e-11
FL-Next: sp=Zinc finger CCCH domain-containing protein 19; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain