Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Alpha tubulin

Term: IPR002452  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene140028 SustainPine v3.0 421
• AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SPT4_RICCO 1.0e-38
• FL-Next: tr=RNA binding protein, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene140374 SustainPine v3.0 1179
• AutoFact: alpha-tubulin [Eucalyptus grandis] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Alpha tubulin 2.223e-14
Putative Complete
sp_v3.0_unigene141689 SustainPine v3.0 512
• AutoFact: Tubulin alpha-1 chain (Fragment) n=3 Tax=Magnoliophyta RepID=A6MZU0_ORYSI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Alpha-tubulin 7.025e-17
C-terminus
sp_v3.0_unigene142258 SustainPine v3.0 743
• AutoFact: alpha-tubulin [Eucalyptus grandis] 5.60519e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Alpha-tubulin 2.563e-11
Putative Complete
sp_v3.0_unigene142280 SustainPine v3.0 1170
• AutoFact: tubulin alpha-3/alpha-5 chain [Arabidopsis thaliana] ref|NP_197479.1| tubulin alpha-3/alpha-5 chain [Arabidopsis thaliana] ref|XP_002871906.1| tubulin alpha-3 [Arabidopsis lyrata subsp. lyrata] ref|XP_002873963.1| tubulin alpha-3 [Arabidopsis lyrata subsp 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Alpha-tubulin 2.884e-33
Putative Complete
sp_v3.0_unigene143144 SustainPine v3.0 1019
• AutoFact: alpha tubulin 1 [Pseudotsuga menziesii var. menziesii] gb|AAV92353.1| alpha tubulin 1 [Pseudotsuga menziesii var. menziesii] gb|AAV92354.1| alpha tubulin 1 [Pseudotsuga menziesii var. menziesii] gb|AAV92355.1| alpha tubulin 1 [Pseudotsuga menziesii var. m 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Alpha-tubulin 1.242e-28
N-terminus
sp_v3.0_unigene143737 SustainPine v3.0 594
• AutoFact: alpha-tubulin [Eucalyptus grandis] 4.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Alpha-tubulin 1.885e-10
Putative C-terminus
sp_v3.0_unigene144162 SustainPine v3.0 784
• AutoFact: Tubulin alpha chain, putative n=14 Tax=Alveolata RepID=C5K635_9ALVE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Alpha tubulin 2.088e-21
Complete
sp_v3.0_unigene144483 SustainPine v3.0 707
• AutoFact: Tubulin alpha-6 chain n=85 Tax=Eukaryota RepID=TBA6_ARATH 0.0
• FL-Next: tr=Alpha tubulin 1; Pseudotsuga menziesii var. menziesii. 0.0
• Sma3: Alpha tubulin 8.085e-19
C-terminus
sp_v3.0_unigene145199 SustainPine v3.0 414
• AutoFact: PREDICTED: tubulin alpha-1C chain-like n=1 Tax=Sus scrofa RepID=UPI0001E87237 1.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Alpha-tubulin 5.046e-26
N-terminus
sp_v3.0_unigene145290 SustainPine v3.0 844
• AutoFact: Tubulin alpha-2/alpha-4 chain n=384 Tax=Eukaryota RepID=TBA2_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Alpha-tubulin 7.864e-29
Putative Complete
sp_v3.0_unigene145426 SustainPine v3.0 879
• AutoFact: PREDICTED: tubulin alpha-8 chain-like n=1 Tax=Meleagris gallopavo RepID=UPI0002034995 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Tubulin alpha-2 chain 1.231e-09
Complete
sp_v3.0_unigene145621 SustainPine v3.0 636
• AutoFact: PREDICTED: tubulin alpha-8 chain-like n=1 Tax=Meleagris gallopavo RepID=UPI0002034995 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Alpha tubulin 1.537e-18
Putative C-terminus
sp_v3.0_unigene145700 SustainPine v3.0 1053
• AutoFact: Tubulin alpha-2 chain n=20 Tax=Magnoliophyta RepID=TBA2_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Alpha-tubulin 4.297e-31
N-terminus
sp_v3.0_unigene145785 SustainPine v3.0 564
• AutoFact: Tubulin alpha-6 chain n=85 Tax=Eukaryota RepID=TBA6_ARATH 0.0
• FL-Next: tr=Alpha tubulin 1; Pseudotsuga menziesii var. menziesii. 0.0
• Sma3: Alpha-tubulin 1.17e-17
Internal
sp_v3.0_unigene145867 SustainPine v3.0 877
• AutoFact: PREDICTED: LOW QUALITY PROTEIN: tubulin alpha-3C/D chain-like n=1 Tax=Pongo abelii RepID=UPI0001D601A7 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Alpha-tubulin 7.897e-20
Internal
sp_v3.0_unigene146028 SustainPine v3.0 969
• AutoFact: Tubulin alpha-6 chain n=85 Tax=Eukaryota RepID=TBA6_ARATH 0.0
• FL-Next: tr=Alpha tubulin 1; Pseudotsuga menziesii var. menziesii. 0.0
• Sma3: Alpha tubulin 1.2e-26
Putative C-terminus
sp_v3.0_unigene146083 SustainPine v3.0 781
• AutoFact: alpha tubulin 1 [Pseudotsuga menziesii var. menziesii] gb|AAV92353.1| alpha tubulin 1 [Pseudotsuga menziesii var. menziesii] gb|AAV92354.1| alpha tubulin 1 [Pseudotsuga menziesii var. menziesii] gb|AAV92355.1| alpha tubulin 1 [Pseudotsuga menziesii var. m 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Alpha tubulin 1.235e-23
C-terminus
sp_v3.0_unigene146086 SustainPine v3.0 982
• AutoFact: Tubulin alpha subunit n=11 Tax=Eukaryota RepID=B1NHW5_9EUKA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Alpha-tubulin 3.286e-14
Misassembled
sp_v3.0_unigene146143 SustainPine v3.0 728
• AutoFact: PREDICTED: similar to Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin isotype M-alpha-3/7) n=1 Tax=Pan troglodytes RepID=UPI0000E23559 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Alpha-tubulin 4.555e-10
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain