Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Ribosomal protein 60S

Term: IPR001813  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene146019 SustainPine v3.0 217
• AutoFact: Ribosomal_60s multi-domain protein 2.0e-15
• Sma3: 60S acidic ribosomal protein P1, putative 5.124e-08
coding
sp_v3.0_unigene146194 SustainPine v3.0 737
• AutoFact: L3 Ribosomal protein n=1 Tax=Medicago sativa subsp. x varia RepID=Q9SBR8_MEDSV 4.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L3 4.258e-17
Internal
sp_v3.0_unigene146246 SustainPine v3.0 212
• AutoFact: acidic ribosomal protein P1a-like [Solanum tuberosum] 4.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S acidic ribosomal protein P1, putative 4.361e-09
N-terminus
sp_v3.0_unigene147488 SustainPine v3.0 124
• AutoFact: [O] COG5272 Ubiquitin 1.0e-12
• FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Putative C-terminus
sp_v3.0_unigene150325 SustainPine v3.0 208
• AutoFact: 60S acidic ribosomal protein P2 n=1 Tax=Camponotus floridanus RepID=E2AYQ2_9HYME 2.0e-08
• FL-Next: sp=60S acidic ribosomal protein P2-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Acidic ribosomal protein P2 7.797e-06
Putative N-terminus
sp_v3.0_unigene150416 SustainPine v3.0 279
• AutoFact: Acidic ribosomal protein P2 n=1 Tax=Chlamydomonas reinhardtii RepID=A8J0R4_CHLRE 7.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Acidic ribosomal protein 1.103e-08
Putative Complete
sp_v3.0_unigene150597 SustainPine v3.0 144
• AutoFact: Ubiquitin family n=1 Tax=Ruminococcus albus 8 RepID=E9S7A1_RUMAL 2.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative polyubiquitin 5.096e-06
Internal
sp_v3.0_unigene150690 SustainPine v3.0 425
• AutoFact: Ribosomal protein LP0-like protein (Fragment) n=1 Tax=Epinephelus coioides RepID=B5T1M1_EPICO 4.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S acidic ribosomal protein P0 2.788e-19
Internal
sp_v3.0_unigene151056 SustainPine v3.0 422
• AutoFact: Polyubiquitin (Fragment) n=10 Tax=Eukaryota RepID=Q867Z6_9EUKA 0.0
• FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Bi-ubiquitin 2.13e-08
Putative Complete
sp_v3.0_unigene151956 SustainPine v3.0 276
• AutoFact: 60s acidic ribosomal protein P1 n=1 Tax=Arabidopsis thaliana RepID=Q9FLV1_ARATH 3.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene152060 SustainPine v3.0 246
• AutoFact: 60S acidic ribosomal protein P2 n=2 Tax=Culicidae RepID=B6DDU4_ANODA 1.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Acidic ribosomal protein 8.982e-10
Putative N-terminus
sp_v3.0_unigene152263 SustainPine v3.0 373
• AutoFact: ubiquitin/ribosomal protein L40 fusion protein [Dictyostelium discoideum AX4] sp|P14794.2|RL40_DICDI RecName: Full=Ubiquitin-60S ribosomal protein L40; AltName: Full=Ubiquitin A-52 residue ribosomal protein fusion product 1; Contains: RecName: Full=Ubiqui 4.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene152852 SustainPine v3.0 320
• AutoFact: 60S acidic ribosomal protein P2 n=22 Tax=Eutheria RepID=RLA2_HUMAN 4.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S acidic ribosomal protein P2 2.253e-11
Putative Complete
sp_v3.0_unigene152853 SustainPine v3.0 333
• AutoFact: Ribosomal protein L10 n=1 Tax=Elaeis guineensis RepID=B3TLL9_ELAGV 3.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene154376 SustainPine v3.0 159
• AutoFact: Ubiquitin n=1 Tax=Euproctis pseudoconspersa nucleopolyhedrovirus RepID=C3TWV6_9ABAC 6.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene154593 SustainPine v3.0 483
• AutoFact: PREDICTED: ribosomal protein P2-like n=1 Tax=Saccoglossus kowalevskii RepID=UPI0001CBBE8E 2.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Acidic ribosomal protein P2 8.619e-09
Complete
sp_v3.0_unigene154789 SustainPine v3.0 351
• AutoFact: Ribosomal protein S27a, component of cytosolic 80S ribosome and 40S small subunit [Ostreococcus lucimarinus CCE9901] gb|ABO96912.1| Ribosomal protein S27a, component of cytosolic 80S ribosome and 40S small subunit [Ostreococcus lucimarinus CCE9901] 3.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene154859 SustainPine v3.0 477
• AutoFact: L10e/P0 n=1 Tax=Suberites domuncula RepID=Q4KTH7_SUBDO 1.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene154895 SustainPine v3.0 402
• AutoFact: Ubiquitin-60S ribosomal protein L40 n=93 Tax=Eukaryota RepID=RL40_DROME 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin 1.455e-11
C-terminus
sp_v3.0_unigene155742 SustainPine v3.0 140
• AutoFact: Ubiquitin extension protein n=2 Tax=Heterodera schachtii RepID=Q86DU4_HETSC 2.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain