Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Ribosomal protein 60S

Term: IPR001813  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene74407 SustainPine v3.0 393
AutoFact: Polyubiquitin (Fragment) n=1 Tax=Lemna minor RepID=Q6B444_LEMMI 4.0e-16
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
C-terminus
sp_v3.0_unigene77295 SustainPine v3.0 441
AutoFact: likely cytosolic ribosomal acidic protein P0 [Candida albicans SC5314] ref|XP_888730.1| hypothetical protein CaO19_7015 [Candida albicans SC5314] gb|EAL01462.1| likely cytosolic ribosomal acidic protein P0 [Candida albicans SC5314] dbj|BAE44627.1| hypothe 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 3.156e-19
Internal
sp_v3.0_unigene77529 SustainPine v3.0 378
AutoFact: 60s acidic ribosomal protein [Prunus dulcis] gb|ABH03379.1| 60S acidic ribosomal protein [Prunus dulcis] 5.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Putative Complete
sp_v3.0_unigene78964 SustainPine v3.0 242
AutoFact: Ubiquitin 1 n=1 Tax=Physarum polycephalum RepID=Q966Q8_PHYPO 3.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene79320 SustainPine v3.0 416
AutoFact: 60S acidic ribosomal protein P0 [Lodderomyces elongisporus NRRL YB-4239] gb|EDK47264.1| 60S acidic ribosomal protein P0 [Lodderomyces elongisporus NRRL YB-4239] 3.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 1.279e-07
C-terminus
sp_v3.0_unigene79714 SustainPine v3.0 312
AutoFact: 60S acidic ribosomal protein P1 n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9S6M2_VERA1 1.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P1 1.111e-10
N-terminus
sp_v3.0_unigene105187 SustainPine v3.0 132
AutoFact: Ubiquitin/actin fusion protein 2 n=7 Tax=Eukaryota RepID=Q7XBP8_BIGNA 6.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene108802 SustainPine v3.0 463
AutoFact: Sodium transporter n=1 Tax=Selaginella moellendorffii RepID=D8S0R1_SELML 1.0e-27
FL-Next: sp=Probable cation transporter HKT6; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: HKT8 2.602e-15
Putative C-terminus
sp_v3.0_unigene110377 SustainPine v3.0 110
AutoFact: Ubiquitin n=1 Tax=Acidovorax citrulli AAC00-1 RepID=A1TWA7_ACIAC 2.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene115921 SustainPine v3.0 551
AutoFact: 60S acidic ribosomal protein P0 n=1 Tax=Postia placenta Mad-698-R RepID=B8NZ89_POSPM 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 2.689e-19
N-terminus
sp_v3.0_unigene127001 SustainPine v3.0 389
AutoFact: 60S acidic ribosomal protein P1 [Zea mays] gb|AAB71079.1| acidic ribosomal protein P1a [Zea mays] gb|ACG31544.1| 60S acidic ribosomal protein P1 [Zea mays] gb|ACR38189.1| unknown [Zea mays] 1.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
N-terminus
sp_v3.0_unigene128986 SustainPine v3.0 544
AutoFact: Ubiquitin n=1 Tax=Hemiselmis andersenii RepID=A9BLD1_HEMAN 4.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene129031 SustainPine v3.0 217
AutoFact: Ubiquitin family protein n=1 Tax=Trichinella spiralis RepID=E5RYS0_TRISP 2.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin 7.468e-07
C-terminus
sp_v3.0_unigene135634 SustainPine v3.0 256
AutoFact: PREDICTED: ubiquitin A-52 residue ribosomal protein fusion product 1 n=1 Tax=Rattus norvegicus RepID=UPI0001CF4A0F 9.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene135668 SustainPine v3.0 139
AutoFact: Ubiquitin n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9CCU3_9EUKA 7.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene140866 SustainPine v3.0 612
AutoFact: RecName: Full=60S acidic ribosomal protein P0 gb|AAB63814.1| acidic ribosomal protein P0 [Glycine max] 9.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 1.039e-19
N-terminus
sp_v3.0_unigene141861 SustainPine v3.0 361
AutoFact: Polyubiquitin (Fragment) n=1 Tax=Lemna minor RepID=Q6B444_LEMMI 2.0e-17
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
C-terminus
sp_v3.0_unigene142277 SustainPine v3.0 1144
AutoFact: 60S acidic ribosomal protein P0 n=4 Tax=Papilionoideae RepID=RLA0_SOYBN 5.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 4.646e-19
Misassembled
sp_v3.0_unigene144155 SustainPine v3.0 703
AutoFact: Chain t, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome pdb|3IZ5|UU Chain u, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Tr 7.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P1 1.756e-10
Putative Complete
sp_v3.0_unigene145082 SustainPine v3.0 203
AutoFact: Ribosomal_60s multi-domain protein 3.0e-12
Sma3: 60S acidic ribosomal protein P1, putative 5.167e-09
coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain