Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Ribosomal protein 60S

Term: IPR001813  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene37717 SustainPine v3.0 480
AutoFact: RecName: Full=60S acidic ribosomal protein P0 gb|AAB63814.1| acidic ribosomal protein P0 [Glycine max] 5.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 3.719e-15
Misassembled
sp_v3.0_unigene38708 SustainPine v3.0 762
AutoFact: 60S acidic ribosomal protein P3 (Fragment) n=6 Tax=Lactuca RepID=Q6Y1D1_9ASTR 4.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene41892 SustainPine v3.0 198
AutoFact: polyubiquitin [Pinus sylvestris] 8.0e-14
FL-Next: tr=Polyubiquitin; Pinus sylvestris (Scots pine). 0.0
Sma3: Polyubiquitin 1.443e-07
Internal
sp_v3.0_unigene42169 SustainPine v3.0 511
AutoFact: Ribosomal protein P2 n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8N9R6_COPC7 1.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene48498 SustainPine v3.0 393
AutoFact: Polyubiquitin 4 UBQ4 n=1 Tax=Arabidopsis thaliana RepID=Q0WRN6_ARATH 0.0
FL-Next: tr=Polyubiquitin; Pinus sylvestris (Scots pine). 0.0
Sma3: Ubiquitin, putative 1.802e-10
Putative N-terminus
sp_v3.0_unigene52250 SustainPine v3.0 164
AutoFact: acidic ribosomal protein P1a-like [Solanum tuberosum] 2.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene54202 SustainPine v3.0 126
AutoFact: Polyubiquitin 14 n=9 Tax=core eudicotyledons RepID=UBQ14_ARATH 3.0e-09
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
C-terminus
sp_v3.0_unigene54957 SustainPine v3.0 235
AutoFact: 60S acidic ribosomal protein P0 n=1 Tax=Caligus clemensi RepID=C1C0H6_9MAXI 2.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S acidic ribosomal protein P0 1.862e-12
Internal
sp_v3.0_unigene55778 SustainPine v3.0 295
AutoFact: Ubiquitin/ribosomal protein L40 fusion n=1 Tax=Bigelowiella natans RepID=Q7X739_BIGNA 5.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene56178 SustainPine v3.0 121
AutoFact: Ubiquitin n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9SSZ7_VERA1 7.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene56224 SustainPine v3.0 197
AutoFact: polyubiquitin [Pinus sylvestris] 1.0e-25
FL-Next: tr=Polyubiquitin; Pinus sylvestris (Scots pine). 0.0
Sma3: Ubiquitin 4.94e-07
Putative N-terminus
sp_v3.0_unigene59582 SustainPine v3.0 124
AutoFact: Ubiquitin n=1 Tax=Ruminococcus albus 7 RepID=E6UIS6_RUMA7 2.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene61825 SustainPine v3.0 182
AutoFact: High affinity potassium transporter 2 n=1 Tax=Mesembryanthemum crystallinum RepID=Q84UZ6_MESCR 2.0e-12
FL-Next: sp=Probable cation transporter HKT7; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Chromosome chr11 scaffold_118, whole genome shotgun sequence 1.988e-09
Internal
sp_v3.0_unigene65490 SustainPine v3.0 113
AutoFact: Ubiquitin n=2 Tax=Dictyosteliida RepID=D3AVZ4_POLPA 7.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Polyubiquitin 2 1.021e-07
Internal
sp_v3.0_unigene65510 SustainPine v3.0 122
AutoFact: Ubiquitin/actin fusion protein 2 n=7 Tax=Eukaryota RepID=Q7XBP8_BIGNA 1.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Polyubiquitin 2 1.021e-07
Internal
sp_v3.0_unigene65569 SustainPine v3.0 97
AutoFact: Ubiquitin n=1 Tax=Riftia pachyptila RepID=B0B068_RIFPA 6.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene65637 SustainPine v3.0 116
AutoFact: Ubiquitin/actin fusion protein 2 n=7 Tax=Eukaryota RepID=Q7XBP8_BIGNA 1.0e-08
FL-Next: tr=Polyubiquitin; Pinus sylvestris (Scots pine). 0.0
Sma3: Polyubiquitin 2 1.015e-07
Internal
sp_v3.0_unigene65770 SustainPine v3.0 97
AutoFact: [O] COG5272 Ubiquitin 9.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene65808 SustainPine v3.0 111
AutoFact: Polyprotein n=97 Tax=Bovine viral diarrhea virus 1 RepID=Q65815_BVDV 1.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene65825 SustainPine v3.0 99
AutoFact: [O] COG5272 Ubiquitin 1.0e-10
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain