Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, CCCH-type

Term: IPR000571  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene76429 SustainPine v3.0 283
• AutoFact: ATP-binding cassette sub-family F member 2 [Neurospora crassa OR74A] gb|EAA29453.1| ATP-binding cassette sub-family F member 2 [Neurospora crassa OR74A] emb|CAD70745.1| probable iron inhibited ABC transporter 2 [Neurospora crassa] gb|EGO61561.1| hypotheti 2.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ABC transporter family protein 3.639e-06
Internal
sp_v3.0_unigene76597 SustainPine v3.0 158
• AutoFact: cleavage and polyadenylation specificity factor CPSF30 [Arabidopsis thaliana] gb|AAF19747.1|AC009917_6 Contains similarity to gb|U96448 cleavage and polyadenylation specificity factor 30 kDa from Bos taurus [Arabidopsis thaliana] gb|AAN41459.1| putative c 2.0e-13
• FL-Next: Isoform 2 of Cleavage and polyadenylation specificity factor CPSF30 OS=Arabidopsis thaliana GN=CPSF30 0.0
Internal
sp_v3.0_unigene77091 SustainPine v3.0 261
• AutoFact: YTH domain containing protein 1.0e-11
• FL-Next: sp=Zinc finger CCCH domain-containing protein 45; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene78432 SustainPine v3.0 259
• AutoFact: zinc finger CCCH domain-containing protein 23 [Arabidopsis thaliana] ref|NP_001189604.1| zinc finger CCCH domain-containing protein 23 [Arabidopsis thaliana] sp|O82307.1|C3H23_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 23; Short=AtC3H2 1.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Zn-finger transcription factor 2.072e-14
Internal
sp_v3.0_unigene78618 SustainPine v3.0 129
• AutoFact: putative receptor ser/thr protein [Oryza sativa Japonica Group] gb|ABF95119.1| Protein kinase domain containing protein, expressed [Oryza sativa Japonica Group] 2.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP binding protein, putative 9.246e-08
Internal
sp_v3.0_unigene79022 SustainPine v3.0 371
• AutoFact: Very similar to receptor-like serine/threonine kinase [Arabidopsis thaliana] 8.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative Receptor-like serine/threonine kinase(RFK1) 1.515e-12
Internal
sp_v3.0_unigene80241 SustainPine v3.0 283
• AutoFact: Unassigned protein
• FL-Next: sp=Zinc finger CCCH domain-containing protein 19; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene80664 SustainPine v3.0 239
• AutoFact: Zinc finger CCCH domain-containing protein 17 n=4 Tax=Oryza sativa RepID=C3H17_ORYSJ 8.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome undetermined scaffold_139, whole genome shotgun sequence 2.159e-13
Internal
sp_v3.0_unigene81211 SustainPine v3.0 178
• AutoFact: probable E3 ubiquitin-protein ligase makorin-2 [Takifugu rubripes] sp|Q5NU13.1|MKRN2_TAKRU RecName: Full=Probable E3 ubiquitin-protein ligase makorin-2 dbj|BAD80900.1| makorin RING finger protein 2 [Takifugu rubripes] 5.0e-05
• FL-Next: sp=Zinc finger CCCH domain-containing protein 69; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene81339 SustainPine v3.0 164
• AutoFact: Unassigned protein
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene93633 SustainPine v3.0 1412
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene93702 SustainPine v3.0 948
• AutoFact: Unassigned protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene93773 SustainPine v3.0 1049
• AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=1 Tax=Ricinus communis RepID=B9SRG2_RICCO 2.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.307e-11
C-terminus
sp_v3.0_unigene94435 SustainPine v3.0 586
• AutoFact: putative receptor-like protein kinase [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative Receptor-like serine/threonine kinase(RFK1) 9.933e-13
Putative C-terminus
sp_v3.0_unigene95499 SustainPine v3.0 803
• AutoFact: Zinc finger CCCH domain-containing protein 3 n=3 Tax=Oryza sativa RepID=C3H3_ORYSJ 2.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene95622 SustainPine v3.0 592
• AutoFact: plastocyanin-like domain-containing protein [Arabidopsis thaliana] gb|AAB95306.1| putative phytocyanin [Arabidopsis thaliana] gb|AEC07879.1| plastocyanin-like domain-containing protein [Arabidopsis thaliana] 6.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative glycine-rich cell wall structural protein 1.958e-07
N-terminus
sp_v3.0_unigene96763 SustainPine v3.0 361
• AutoFact: Unassigned protein
• FL-Next: sp=Zinc finger CCCH domain-containing protein 41; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene96880 SustainPine v3.0 478
• AutoFact: Unassigned protein
• FL-Next: sp=Zinc finger CCCH domain-containing protein 19; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene97661 SustainPine v3.0 415
• AutoFact: Unassigned protein
• FL-Next: Isoform 2 of Probable galacturonosyltransferase 13 OS=Arabidopsis thaliana GN=GAUT13 0.0
• Sma3: Glycosyltransferase, CAZy family GT8 3.633e-10
Internal
sp_v3.0_unigene99610 SustainPine v3.0 878
• AutoFact: Ank_2 multi-domain protein 6.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain