Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, CCCH-type

Term: IPR000571  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene66557 SustainPine v3.0 442
• AutoFact: Zinc finger CCCH domain-containing protein 17 n=4 Tax=Oryza sativa RepID=C3H17_ORYSJ 9.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: F-box and wd40 domain protein, putative 1.474e-09
C-terminus
sp_v3.0_unigene67348 SustainPine v3.0 168
• AutoFact: RRM-containing RNA-binding protein-like protein [Solanum tuberosum] 2.0e-07
• FL-Next: sp=Zinc finger CCCH domain-containing protein 40; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: RRM-containing RNA-binding protein-like protein 6.118e-09
Internal
sp_v3.0_unigene68995 SustainPine v3.0 269
• AutoFact: putative U2 snRNP auxiliary factor [Chenopodium rubrum] 9.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U2 snrnp auxiliary factor, small subunit, putative 1.917e-11
Internal
sp_v3.0_unigene69611 SustainPine v3.0 265
• AutoFact: Protein kinase n=1 Tax=Ipomoea nil RepID=A9CM11_IPONI 3.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Receptor serine-threonine protein kinase, putative 1.195e-10
Internal
sp_v3.0_unigene69701 SustainPine v3.0 140
• AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RT23_RICCO 6.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene69753 SustainPine v3.0 117
• AutoFact: Putative zinc finger protein [Arabidopsis thaliana] 8.0e-07
• FL-Next: sp=Zinc finger CCCH domain-containing protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: RING finger protein 113A, putative 1.082e-09
Internal
sp_v3.0_unigene70159 SustainPine v3.0 419
• AutoFact: Unassigned protein 8.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene72686 SustainPine v3.0 315
• AutoFact: DNA binding / nucleic acid binding / protein binding / zinc ion binding 3.0e-18
• FL-Next: sp=Zinc finger CCCH domain-containing protein 19; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene73800 SustainPine v3.0 357
• AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RL60_RICCO 2.0e-30
• FL-Next: sp=Zinc finger CCCH domain-containing protein 16; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene74356 SustainPine v3.0 491
• AutoFact: zinc finger, matrin type 5 [Danio rerio] 2.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene74393 SustainPine v3.0 363
• AutoFact: Unassigned protein
• FL-Next: sp=Zinc finger CCCH domain-containing protein 53; Oryza sativa subsp. japonica (Rice). 0.0
N-terminus
sp_v3.0_unigene74527 SustainPine v3.0 316
• AutoFact: pfam03000, NPH3, NPH3 family 2.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Transposon protein Mutator sub-class 1.69e-16
Internal
sp_v3.0_unigene75102 SustainPine v3.0 337
• AutoFact: putative Receptor-like serine/threonine kinase(RFK1) [Oryza sativa Japonica Group] 4.00001e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome chr10 scaffold_81, whole genome shotgun sequence 9.315e-13
Internal
sp_v3.0_unigene75166 SustainPine v3.0 137
• AutoFact: AAA ATPase; ABC transporter, transmembrane region, type 1 [Medicago truncatula] 4.0e-15
• FL-Next: sp=ABC transporter D family member 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene75381 SustainPine v3.0 285
• AutoFact: RNA-binding motif protein, X-linked 2 [Arabidopsis thaliana] sp|Q9SD61.1|C3H42_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 42; Short=AtC3H42 emb|CAB61958.1| putative RNA binding protein [Arabidopsis thaliana] gb|AAO00832.1| putative RNA 3.0e-10
• FL-Next: sp=Zinc finger CCCH domain-containing protein 25; Oryza sativa subsp. japonica (Rice). 0.0
Putative N-terminus
sp_v3.0_unigene75405 SustainPine v3.0 153
• AutoFact: putative protein kinase; 29119-30743 [Arabidopsis thaliana] 8.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Leucine-rich repeat receptor-like protein kinase 7.406e-09
Internal
sp_v3.0_unigene75492 SustainPine v3.0 181
• AutoFact: putative serine/threonine kinase [Manihot esculenta] 4.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP binding protein, putative 1.498e-08
Internal
sp_v3.0_unigene75698 SustainPine v3.0 433
• AutoFact: Root phototropism protein, putative n=1 Tax=Ricinus communis RepID=B9SKU3_RICCO 6.02558e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Transposon protein, putative, Mutator sub-class, expressed 1.562e-15
N-terminus
sp_v3.0_unigene75713 SustainPine v3.0 445
• AutoFact: cysteine-rich receptor-like protein kinase 42 [Arabidopsis thaliana] sp|Q9FNE1.1|CRK42_ARATH RecName: Full=Cysteine-rich receptor-like protein kinase 42; Short=Cysteine-rich RLK42; Flags: Precursor dbj|BAB11593.1| receptor-like serine/threonine kinase [Ar 1.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome chr10 scaffold_81, whole genome shotgun sequence 3.104e-09
Internal
sp_v3.0_unigene76290 SustainPine v3.0 229
• AutoFact: Unassigned protein 1.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain