Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, CCCH-type

Term: IPR000571  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene52607 SustainPine v3.0 209
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene52661 SustainPine v3.0 283
AutoFact: putative receptor-like protein kinase [Oryza sativa Japonica Group] 8.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine/threonine-protein kinase receptor 8.782e-11
Internal
sp_v3.0_unigene53234 SustainPine v3.0 299
AutoFact: RRM-containing RNA-binding protein-like protein n=2 Tax=Solanum tuberosum RepID=Q2PYX8_SOLTU 1.0e-07
FL-Next: sp=Zinc finger CCCH domain-containing protein 40; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: RRM-containing RNA-binding protein-like protein 5.167e-09
N-terminus
sp_v3.0_unigene53607 SustainPine v3.0 367
AutoFact: zinc finger CCCH domain-containing protein 20 [Arabidopsis thaliana] sp|O82199.1|C3H20_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 20; Short=AtC3H20 gb|AAC62135.1| putative CCCH-type zinc finger protein [Arabidopsis thaliana] gb|AAM6084 1.99993e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Zn-finger transcription factor 1.563e-14
Internal
sp_v3.0_unigene53787 SustainPine v3.0 401
AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=1 Tax=Ricinus communis RepID=B9SPC8_RICCO 3.00018e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene54226 SustainPine v3.0 464
AutoFact: Flagellar associated protein n=2 Tax=Chlamydomonadales RepID=A8JC09_CHLRE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Non-transporter ABC protein (ISS) 1.306e-08
Internal
sp_v3.0_unigene54351 SustainPine v3.0 351
AutoFact: zinc finger, matrin type 5 [Danio rerio] 5.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene54997 SustainPine v3.0 176
AutoFact: U2 auxiliary factor small subunit [Arabidopsis thaliana] 7.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U2 snrnp auxiliary factor, small subunit, putative 1.301e-11
Internal
sp_v3.0_unigene55800 SustainPine v3.0 447
AutoFact: BTB/POZ; Superoxide dismutase, copper/zinc binding; NPH3 [Medicago truncatula] 6.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Transposon protein, putative, Mutator sub-class, expressed 3.545e-13
Internal
sp_v3.0_unigene57644 SustainPine v3.0 381
AutoFact: Unassigned protein 4.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene60264 SustainPine v3.0 351
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome undetermined scaffold_139, whole genome shotgun sequence 4.136e-08
C-terminus
sp_v3.0_unigene60612 SustainPine v3.0 199
AutoFact: Zinc finger CCCH domain-containing protein 36 n=3 Tax=Brassicaceae RepID=C3H36_ARATH 4.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene60873 SustainPine v3.0 167
AutoFact: zinc finger CCCH domain-containing protein 17 [Arabidopsis thaliana] sp|Q9ZUM0.1|C3H17_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 17; Short=AtC3H17 gb|AAC97218.1| expressed protein [Arabidopsis thaliana] gb|AAN41294.1| unknown protein 1.0e-14
FL-Next: sp=Zinc finger CCCH domain-containing protein 19; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Zinc finger C-x8-C-x5-C-x3-H type family protein 1.45e-07
Internal
sp_v3.0_unigene61734 SustainPine v3.0 344
AutoFact: Zinc finger CCCH domain-containing protein 17 n=4 Tax=Oryza sativa RepID=C3H17_ORYSJ 2.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome undetermined scaffold_139, whole genome shotgun sequence 9.037e-13
Internal
sp_v3.0_unigene61842 SustainPine v3.0 140
AutoFact: RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb|AEE76829.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] 5.0e-08
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative C-terminus
sp_v3.0_unigene62140 SustainPine v3.0 347
AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=1 Tax=Ricinus communis RepID=B9SRG2_RICCO 3.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.422e-11
Internal
sp_v3.0_unigene62689 SustainPine v3.0 323
AutoFact: Peroxisomal membrane protein, putative n=1 Tax=Ricinus communis RepID=B9RKV1_RICCO 3.0e-11
FL-Next: sp=ABC transporter D family member 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene63934 SustainPine v3.0 266
AutoFact: Serine/threonine kinase n=12 Tax=Brassicaceae RepID=O04384_BRAOL 1.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome undetermined scaffold_278, whole genome shotgun sequence 1.05e-13
Internal
sp_v3.0_unigene65956 SustainPine v3.0 160
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene66537 SustainPine v3.0 372
AutoFact: [RTKL] COG0515 Serine/threonine protein kinase 2.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative Receptor-like serine/threonine kinase(RFK1) 1.299e-12
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain