Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, CCCH-type

Term: IPR000571  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene37693 SustainPine v3.0 1525
AutoFact: zf-CCCH domain containing protein 7.0e-05
FL-Next: Isoform 2 of Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa subsp. japonica GN=Os03g0328900 0.0
Internal
sp_v3.0_unigene37699 SustainPine v3.0 3182
AutoFact: Eukaryotic initiation factor iso4G n=1 Tax=Carica papaya RepID=E3V0I0_CARPA 0.0
FL-Next: sp=Eukaryotic initiation factor iso-4F subunit p82-34; Triticum aestivum (Wheat). 0.0
Sma3: Translation initiation factor eIF(Iso)4G 7.738e-09
Complete
sp_v3.0_unigene37856 SustainPine v3.0 1578
AutoFact: RecName: Full=Zinc finger CCCH domain-containing protein 14; Short=OsC3H14 dbj|BAD15406.1| KH domain-containing protein-like [Oryza sativa Japonica Group] gb|EAY84850.1| hypothetical protein OsI_06216 [Oryza sativa Indica Group] gb|EAZ22072.1| hypothetica 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene39478 SustainPine v3.0 173
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SAR2_RICCO 2.0e-07
FL-Next: sp=Zinc finger CCCH domain-containing protein 4; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene41963 SustainPine v3.0 248
AutoFact: Nucleic acid binding protein n=2 Tax=Zea mays RepID=B6SW16_MAIZE 1.0e-10
FL-Next: sp=Zinc finger CCCH domain-containing protein 46; Oryza sativa subsp. japonica (Rice). 0.0
N-terminus
sp_v3.0_unigene42469 SustainPine v3.0 1014
AutoFact: RecName: Full=Zinc finger CCCH domain-containing protein 4; Short=OsC3H4 dbj|BAE95808.1| ATP-dependent RNA helicase A -like [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Zinc finger CCCH domain-containing protein 4; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene42642 SustainPine v3.0 518
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SSJ9_RICCO 8.96831e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Zinc finger CCCH domain-containing protein ZFN-like 2 2.102e-08
Internal
sp_v3.0_unigene43037 SustainPine v3.0 1079
AutoFact: Root phototropism protein, putative n=1 Tax=Ricinus communis RepID=B9T4I9_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Root phototropism protein, putative 2.225e-13
Internal
sp_v3.0_unigene43059 SustainPine v3.0 349
AutoFact: phototropic-responsive NPH3-like protein [Arabidopsis thaliana] sp|Q66GP0.2|Y5738_ARATH RecName: Full=BTB/POZ domain-containing protein At5g67385 gb|AED98336.1| phototropic-responsive NPH3-like protein [Arabidopsis thaliana] 6.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Root phototropism protein, putative 2.565e-13
Putative N-terminus
sp_v3.0_unigene45281 SustainPine v3.0 222
AutoFact: zinc finger CCCH domain-containing protein 3 [Arabidopsis thaliana] ref|NP_973759.1| zinc finger CCCH domain-containing protein 3 [Arabidopsis thaliana] sp|Q94AD9.1|C3H3_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 3; Short=AtC3H3; AltNa 4.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene45875 SustainPine v3.0 118
AutoFact: CCCH type zinc finger protein n=1 Tax=Brassica rapa RepID=E2IPB5_BRACM 2.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene46352 SustainPine v3.0 1357
AutoFact: cleavage and polyadenylation specificity factor CPSF30 [Arabidopsis thaliana] sp|A9LNK9.1|CPSF_ARATH RecName: Full=Cleavage and polyadenylation specificity factor CPSF30; AltName: Full=Zinc finger CCCH domain-containing protein 11; Short=AtC3H11 gb|ABX260 0.0
FL-Next: Isoform 2 of Cleavage and polyadenylation specificity factor CPSF30 OS=Arabidopsis thaliana GN=CPSF30 0.0
Complete
sp_v3.0_unigene47503 SustainPine v3.0 605
AutoFact: SHR5-receptor-like kinase [Saccharum hybrid cultivar SP70-1143] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP binding protein, putative 9.061e-15
Internal
sp_v3.0_unigene49101 SustainPine v3.0 517
AutoFact: zinc finger CCCH domain-containing protein 17 [Arabidopsis thaliana] sp|Q9ZUM0.1|C3H17_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 17; Short=AtC3H17 gb|AAC97218.1| expressed protein [Arabidopsis thaliana] gb|AAN41294.1| unknown protein 2.0e-34
FL-Next: sp=Zinc finger CCCH domain-containing protein 32; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Zinc finger C-x8-C-x5-C-x3-H type family protein 2.022e-07
Putative N-terminus
sp_v3.0_unigene49115 SustainPine v3.0 262
AutoFact: ATP binding protein, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9SLN9_RICCO 4.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr10 scaffold_81, whole genome shotgun sequence 9.894e-13
Internal
sp_v3.0_unigene49870 SustainPine v3.0 729
AutoFact: Ank_2 multi-domain protein 7.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene50303 SustainPine v3.0 879
AutoFact: kinase domain-containing protein [Arabidopsis thaliana] gb|AAL24403.1| Unknown protein [Arabidopsis thaliana] gb|AAN15471.1| Unknown protein [Arabidopsis thaliana] gb|AEE29481.1| kinase domain-containing protein [Arabidopsis thaliana] 1.4013e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine/threonine-protein kinase receptor 5.071e-11
C-terminus
sp_v3.0_unigene52032 SustainPine v3.0 371
AutoFact: Nuclear receptor binding set domain containing protein 1, nsd, putative n=1 Tax=Ricinus communis RepID=B9T6E1_RICCO 2.0e-20
FL-Next: sp=Zinc finger CCCH domain-containing protein 19; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene52366 SustainPine v3.0 362
AutoFact: zinc finger, matrin type 5 [Danio rerio] 3.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene52563 SustainPine v3.0 121
AutoFact: PREDICTED: similar to RNA-binding protein, putative [Nasonia vitripennis] 4.0e-07
FL-Next: sp=Zinc finger CCCH domain-containing protein 25; Oryza sativa subsp. japonica (Rice). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain