Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, CCCH-type

Term: IPR000571  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene20862 SustainPine v3.0 636
• AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=1 Tax=Ricinus communis RepID=B9SRG2_RICCO 1.4013e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.683e-11
Internal
sp_v3.0_unigene21950 SustainPine v3.0 883
• AutoFact: putative receptor-like protein kinase [Arabidopsis thaliana] sp|O04086.1|Y1105_ARATH RecName: Full=Probable receptor-like protein kinase At1g11050; Flags: Precursor gb|AAB65477.1| Ser/Thr protein kinase isolog; 46094-44217 [Arabidopsis thaliana] gb|AEE286 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome chr10 scaffold_81, whole genome shotgun sequence 9.239e-17
C-terminus
sp_v3.0_unigene22196 SustainPine v3.0 613
• AutoFact: Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9SNX7_RICCO 5.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative Receptor-like serine/threonine kinase(RFK1) 1.123e-12
Internal
sp_v3.0_unigene22914 SustainPine v3.0 1005
• AutoFact: putative receptor-like protein kinase [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative Receptor-like serine/threonine kinase(RFK1) 1.234e-12
Complete
sp_v3.0_unigene23571 SustainPine v3.0 1650
• AutoFact: RecName: Full=Zinc finger CCCH domain-containing protein 14; Short=OsC3H14 dbj|BAD15406.1| KH domain-containing protein-like [Oryza sativa Japonica Group] gb|EAY84850.1| hypothetical protein OsI_06216 [Oryza sativa Indica Group] gb|EAZ22072.1| hypothetica 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene23671 SustainPine v3.0 718
• AutoFact: RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb|AEE76829.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] 2.0e-28
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene24081 SustainPine v3.0 396
• AutoFact: Zinc finger protein n=1 Tax=Ciona intestinalis RepID=Q1RLG4_CIOIN 3.0e-28
• FL-Next: sp=tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like; Oryza sativa subsp. japonica (Rice). 0.0
Putative C-terminus
sp_v3.0_unigene24751 SustainPine v3.0 577
• AutoFact: RNA-binding motif protein, X-linked 2 [Arabidopsis thaliana] sp|Q9SD61.1|C3H42_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 42; Short=AtC3H42 emb|CAB61958.1| putative RNA binding protein [Arabidopsis thaliana] gb|AAO00832.1| putative RNA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene26885 SustainPine v3.0 769
• AutoFact: Unassigned protein 3.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene27543 SustainPine v3.0 684
• AutoFact: MAP7 multi-domain protein 2.0e-09
• Sma3: U2 auxiliary factor small subunit 6.335e-06
coding
sp_v3.0_unigene28672 SustainPine v3.0 349
• AutoFact: RNA-binding motif protein, X-linked 2 [Arabidopsis thaliana] sp|Q9SD61.1|C3H42_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 42; Short=AtC3H42 emb|CAB61958.1| putative RNA binding protein [Arabidopsis thaliana] gb|AAO00832.1| putative RNA 2.0e-12
• FL-Next: sp=Zinc finger CCCH domain-containing protein 25; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene28776 SustainPine v3.0 3134
• AutoFact: zf-CCCH domain containing protein 0.0001
• FL-Next: Isoform 2 of Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa subsp. japonica GN=Os03g0328900 0.0
Putative Complete
sp_v3.0_unigene28911 SustainPine v3.0 459
• AutoFact: RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb|AEE76829.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] 2.0e-17
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene29250 SustainPine v3.0 469
• AutoFact: pfam00076, RRM_1, RNA recognition motif 1.0e-06
• FL-Next: sp=Zinc finger CCCH domain-containing protein 41; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene31366 SustainPine v3.0 738
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene34187 SustainPine v3.0 1466
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene34214 SustainPine v3.0 2156
• AutoFact: Unassigned protein
• FL-Next: sp=Zinc finger CCCH domain-containing protein 27; Oryza sativa subsp. japonica (Rice). 0.0
C-terminus
sp_v3.0_unigene34232 SustainPine v3.0 1856
• AutoFact: Phototropic-responsive NPH3 family protein [Arabidopsis thaliana] sp|Q9SA69.1|Y1301_ARATH RecName: Full=BTB/POZ domain-containing protein At1g03010 gb|AAD25808.1|AC006550_16 F10O3.17 [Arabidopsis thaliana] gb|AEE27514.1| Phototropic-responsive NPH3 family 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Root phototropism protein, putative 2.932e-07
N-terminus
sp_v3.0_unigene35187 SustainPine v3.0 427
• AutoFact: Protein kinase family protein n=1 Tax=Glycine max RepID=C6ZRR0_SOYBN 7.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Serine/threonine-protein kinase receptor 7.927e-11
Internal
sp_v3.0_unigene37218 SustainPine v3.0 2518
• AutoFact: Zinc finger, CCCH-type; Sugar transporter superfamily [Medicago truncatula] 0.0
• FL-Next: sp=Zinc finger CCCH domain-containing protein 63; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Nucleic acid binding protein, putative 1.064e-08
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain