Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, CCCH-type

Term: IPR000571  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene12370 SustainPine v3.0 4956
AutoFact: Plus-3 multi-domain protein 7.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene12481 SustainPine v3.0 3616
AutoFact: zinc finger CCCH domain-containing protein 17 [Arabidopsis thaliana] sp|Q9ZUM0.1|C3H17_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 17; Short=AtC3H17 gb|AAC97218.1| expressed protein [Arabidopsis thaliana] gb|AAN41294.1| unknown protein 9.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene12979 SustainPine v3.0 5320
AutoFact: Atrophin-1 multi-domain protein 4.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene13341 SustainPine v3.0 1139
AutoFact: zinc finger CCCH domain-containing protein 64 [Arabidopsis thaliana] gb|AED96820.1| zinc finger CCCH domain-containing protein 64 [Arabidopsis thaliana] 0.0
FL-Next: sp=Zinc finger CCCH domain-containing protein 59; Oryza sativa subsp. japonica (Rice). 0.0
C-terminus
sp_v3.0_unigene13364 SustainPine v3.0 1012
AutoFact: Phototropic-responsive NPH3 family protein [Arabidopsis thaliana] sp|Q9SA69.1|Y1301_ARATH RecName: Full=BTB/POZ domain-containing protein At1g03010 gb|AAD25808.1|AC006550_16 F10O3.17 [Arabidopsis thaliana] gb|AEE27514.1| Phototropic-responsive NPH3 family 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Transposon protein, putative, Mutator sub-class, expressed 5.229e-13
C-terminus
sp_v3.0_unigene14279 SustainPine v3.0 1201
AutoFact: Transformer multi-domain protein 0.0001
coding
sp_v3.0_unigene14332 SustainPine v3.0 1935
AutoFact: pfam02037, SAP, SAP domain 9.0e-08
FL-Next: sp=Zinc finger CCCH domain-containing protein 62; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene14342 SustainPine v3.0 663
AutoFact: ABC transporter D family member 2, chloroplastic n=2 Tax=Arabidopsis RepID=AB2D_ARATH 9.0e-16
FL-Next: sp=ABC transporter D family member 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene15535 SustainPine v3.0 929
AutoFact: Eukaryotic initiation factor-like protein n=9 Tax=Oryza RepID=Q84PB3_ORYSJ 0.0
FL-Next: sp=Eukaryotic initiation factor iso-4F subunit p82-34; Triticum aestivum (Wheat). 0.0
Sma3: Translation initiation factor eIF(Iso)4G 1.124e-08
Internal
sp_v3.0_unigene15764 SustainPine v3.0 1196
AutoFact: SHR5-receptor-like kinase [Saccharum hybrid cultivar SP70-1143] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr10 scaffold_81, whole genome shotgun sequence 5.483e-13
Putative C-terminus
sp_v3.0_unigene16814 SustainPine v3.0 981
AutoFact: SHR5-receptor-like kinase [Saccharum hybrid cultivar SP70-1143] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr10 scaffold_81, whole genome shotgun sequence 1.028e-14
Putative C-terminus
sp_v3.0_unigene16857 SustainPine v3.0 644
AutoFact: zinc finger CCCH domain-containing protein 57 [Arabidopsis thaliana] gb|AAM61197.1| zinc finger protein 3 [Arabidopsis thaliana] gb|AED92307.1| zinc finger CCCH domain-containing protein 57 [Arabidopsis thaliana] 2.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene17127 SustainPine v3.0 932
AutoFact: DUF1777 multi-domain protein 7.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene17322 SustainPine v3.0 1674
AutoFact: Prolyl 4-hydroxylase alpha subunit, putative n=1 Tax=Ricinus communis RepID=B9RSW4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Prolyl 4-hydroxylase alpha subunit, putative 1.667e-19
Complete
sp_v3.0_unigene17894 SustainPine v3.0 2017
AutoFact: RecName: Full=Zinc finger CCCH domain-containing protein 14; Short=OsC3H14 dbj|BAD15406.1| KH domain-containing protein-like [Oryza sativa Japonica Group] gb|EAY84850.1| hypothetical protein OsI_06216 [Oryza sativa Indica Group] gb|EAZ22072.1| hypothetica 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene18323 SustainPine v3.0 893
AutoFact: zinc finger, matrin type 5 [Danio rerio] 1.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene18647 SustainPine v3.0 2029
AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=1 Tax=Ricinus communis RepID=B9SRG2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene18681 SustainPine v3.0 785
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene19008 SustainPine v3.0 1032
AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9SNT2_RICCO 2.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene20682 SustainPine v3.0 3225
AutoFact: zinc finger CCCH domain-containing protein 18 [Arabidopsis thaliana] sp|Q9SJ41.1|C3H18_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 18; Short=AtC3H18 gb|AAD29054.1| hypothetical protein [Arabidopsis thaliana] gb|AEC05899.1| zinc finger C 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain