Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: Zinc finger, CCCH-type

Term: IPR000571  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene7015 SustainPine v3.0 1553
• AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9SNT2_RICCO 2.94273e-44
• FL-Next: sp=Zinc finger CCCH domain-containing protein 56; Oryza sativa subsp. japonica (Rice). 0.0
N-terminus
sp_v3.0_unigene7089 SustainPine v3.0 2465
• AutoFact: RecName: Full=Zinc finger CCCH domain-containing protein ZFN-like gb|AAD45720.1| zinc finger protein [Pisum sativum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Zinc finger CCCH type domain-containing protein ZFN-like 3 3.585e-08
Complete
sp_v3.0_unigene7202 SustainPine v3.0 1169
• AutoFact: Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) (ISS) [Ostreococcus tauri] emb|CAL57619.1| Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) (ISS) [Ostreococcus tauri] 1.99965e-42
• FL-Next: sp=Pumilio homolog 12; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Pumilio-family RNA binding repeat containing protein, expressed 1.442e-11
C-terminus
sp_v3.0_unigene7315 SustainPine v3.0 1437
• AutoFact: zinc finger CCCH domain-containing protein 15 [Arabidopsis thaliana] sp|Q9C9F5.1|C3H15_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 15; Short=AtC3H15 gb|AAG52611.1|AC016447_20 putative zinc finger protein; 81747-79917 [Arabidopsis thalia 2.0e-39
• FL-Next: sp=Zinc finger CCCH domain-containing protein 15; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete
sp_v3.0_unigene7435 SustainPine v3.0 2073
• AutoFact: SRI domain containing protein 2.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene7513 SustainPine v3.0 2557
• AutoFact: Zinc finger CCCH domain-containing protein 35 n=2 Tax=Oryza sativa RepID=C3H35_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Zn-finger transcription factor 7.582e-15
Complete
sp_v3.0_unigene8436 SustainPine v3.0 2051
• AutoFact: RRM-containing RNA-binding protein-like protein n=2 Tax=Solanum tuberosum RepID=Q2PYX8_SOLTU 0.0
• FL-Next: sp=Zinc finger CCCH domain-containing protein 40; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: RRM-containing RNA-binding protein-like protein 1.072e-08
Complete
sp_v3.0_unigene9100 SustainPine v3.0 919
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene9351 SustainPine v3.0 817
• AutoFact: Phototropic-responsive NPH3 protein [Arabidopsis thaliana] sp|Q9FKB6.1|Y5880_ARATH RecName: Full=BTB/POZ domain-containing protein At5g48800 dbj|BAB09433.1| non-phototropic hypocotyl-like protein [Arabidopsis thaliana] gb|AED95726.1| Phototropic-responsiv 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Root phototropism protein, putative 4.636e-14
Internal
sp_v3.0_unigene9738 SustainPine v3.0 2372
• AutoFact: Probable galacturonosyltransferase 13 n=5 Tax=Arabidopsis RepID=GAUTD_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycosyltransferase QUASIMODO1, putative 8.579e-28
Complete
sp_v3.0_unigene9819 SustainPine v3.0 2285
• AutoFact: Galacturonosyltransferase GAUT12/13/14/15-like protein n=1 Tax=Selaginella moellendorffii RepID=D8SK68_SELML 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycosyltransferase QUASIMODO1, putative 1.651e-27
Complete
sp_v3.0_unigene9960 SustainPine v3.0 665
• AutoFact: zinc finger CCCH domain-containing protein 46 [Arabidopsis thaliana] ref|NP_001030840.1| zinc finger CCCH domain-containing protein 46 [Arabidopsis thaliana] sp|Q9SV09.1|C3H46_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 46; Short=AtC3H4 2.0e-20
• FL-Next: sp=Zinc finger CCCH domain-containing protein 46; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene10228 SustainPine v3.0 2242
• AutoFact: SAP domain-containing protein [Arabidopsis thaliana] dbj|BAB08626.1| unnamed protein product [Arabidopsis thaliana] gb|AED98270.1| SAP domain-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Complete
sp_v3.0_unigene10600 SustainPine v3.0 1450
• AutoFact: Pre-mRNA splicing factor [Solanum tuberosum] 1.0e-06
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
N-terminus
sp_v3.0_unigene10838 SustainPine v3.0 1396
• AutoFact: prolyl 4-hydroxylase [Dianthus caryophyllus] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Prolyl 4-hydroxylase alpha subunit, putative 5.956e-23
Complete
sp_v3.0_unigene10842 SustainPine v3.0 2911
• AutoFact: zinc finger CCCH domain-containing protein 20 [Arabidopsis thaliana] sp|O82199.1|C3H20_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 20; Short=AtC3H20 gb|AAC62135.1| putative CCCH-type zinc finger protein [Arabidopsis thaliana] gb|AAM6084 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene10952 SustainPine v3.0 1677
• AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=2 Tax=rosids RepID=B9R8U8_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.853e-11
Complete
sp_v3.0_unigene11500 SustainPine v3.0 2848
• AutoFact: [J] COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 3.0e-18
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Complete
sp_v3.0_unigene11675 SustainPine v3.0 1938
• AutoFact: Makorin-1, putative n=1 Tax=Ricinus communis RepID=B9SL96_RICCO 0.0
• FL-Next: sp=E3 ubiquitin-protein ligase makorin; Oryza sativa subsp. japonica (Rice). 0.0
Complete
sp_v3.0_unigene12016 SustainPine v3.0 1993
• AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=1 Tax=Ricinus communis RepID=B9SRG2_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.853e-11
Complete

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain