Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: Zinc finger, CCCH-type

Term: IPR000571  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene167988 SustainPine v3.0 253
AutoFact: receptor ser/thr protein kinase-like [Oryza sativa Japonica Group] dbj|BAD25902.1| receptor ser/thr protein kinase-like [Oryza sativa Japonica Group] 2.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine/threonine-protein kinase receptor 1.366e-14
Internal
sp_v3.0_unigene173854 SustainPine v3.0 447
AutoFact: Herpes_gp2 multi-domain protein 4.0e-11
coding
sp_v3.0_unigene183076 SustainPine v3.0 436
AutoFact: Peroxisomal membrane ABC transporter family, PMP family (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HYE2_POPTR 0.0
FL-Next: sp=ABC transporter D family member 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene184309 SustainPine v3.0 772
AutoFact: Putative U2 snRNP auxiliary factor (Fragment) n=1 Tax=Chenopodium rubrum RepID=Q1H8Q9_CHERU 5.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U2 snrnp auxiliary factor, small subunit, putative 3.873e-12
Internal
sp_v3.0_unigene184316 SustainPine v3.0 494
AutoFact: zinc finger (CCCH-type) protein-like [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Zinc finger CCCH domain-containing protein 7; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene184630 SustainPine v3.0 361
AutoFact: zinc finger CCCH domain-containing protein 6 [Arabidopsis thaliana] sp|Q56XU4.1|C3H6_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 6; Short=AtC3H6 dbj|BAD95060.1| hypothetical protein [Arabidopsis thaliana] gb|ABF58975.1| At1g19860 [Arabi 4.0e-09
FL-Next: sp=Zinc finger CCCH domain-containing protein 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene186580 SustainPine v3.0 432
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SAR2_RICCO 4.0e-26
FL-Next: sp=Zinc finger CCCH domain-containing protein 4; Oryza sativa subsp. japonica (Rice). 0.0
N-terminus
sp_v3.0_unigene188633 SustainPine v3.0 423
AutoFact: zf-CCCH domain containing protein 7.0e-05
FL-Next: sp=Zinc finger CCCH domain-containing protein 42; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene190854 SustainPine v3.0 393
AutoFact: Splicing factor U2af 38 kDa subunit n=1 Tax=Salpingoeca sp. ATCC 50818 RepID=F2UL33_9EUKA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.461e-11
Internal
sp_v3.0_unigene192042 SustainPine v3.0 161
AutoFact: CCCH-type Zn-finger protein (ISS) [Ostreococcus tauri] emb|CAL52924.1| CCCH-type Zn-finger protein (ISS) [Ostreococcus tauri] 2.0e-12
FL-Next: sp=Zinc finger CCCH domain-containing protein 14; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative C-terminus
sp_v3.0_unigene192771 SustainPine v3.0 481
AutoFact: ATP-binding cassette, sub-family F, member 2-like [Danio rerio] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP-binding cassette superfamily 1.732e-09
C-terminus
sp_v3.0_unigene197012 SustainPine v3.0 218
AutoFact: Putative receptor protein kinase n=1 Tax=Oryza sativa Japonica Group RepID=Q8S3P8_ORYSJ 7.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative Receptor-like serine/threonine kinase(RFK1) 1.084e-12
Internal
sp_v3.0_unigene198610 SustainPine v3.0 372
AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=2 Tax=rosids RepID=B9R8U8_RICCO 6.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.422e-11
N-terminus
sp_v3.0_unigene201400 SustainPine v3.0 710
AutoFact: Very similar to receptor-like serine/threonine kinase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP binding protein, putative 2.315e-13
Putative C-terminus
sp_v3.0_unigene208593 SustainPine v3.0 481
AutoFact: Zinc finger CCCH domain-containing protein 37 n=3 Tax=Arabidopsis RepID=C3H37_ARATH 3.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene210071 SustainPine v3.0 680
AutoFact: Transcription factor (Fragment) n=1 Tax=Lycoris longituba RepID=D6MKG2_9ASPA 3.0e-39
FL-Next: Isoform 2 of Cleavage and polyadenylation specificity factor CPSF30 OS=Arabidopsis thaliana GN=CPSF30 0.0
N-terminus
sp_v3.0_unigene210169 SustainPine v3.0 581
AutoFact: Putative U2 snRNP auxiliary factor (Fragment) n=1 Tax=Chenopodium rubrum RepID=Q1H8Q9_CHERU 3.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U2 snrnp auxiliary factor, small subunit, putative 3.277e-12
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain