Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: Zinc finger, CCCH-type

Term: IPR000571  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene151033 SustainPine v3.0 289
• AutoFact: PREDICTED: similar to ATP-binding cassette sub-family F member 2 [Tribolium castaneum] gb|EFA03773.1| hypothetical protein TcasGA2_TC013884 [Tribolium castaneum] 2.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ABC transporter 1.143e-14
Internal
sp_v3.0_unigene151079 SustainPine v3.0 455
• AutoFact: Unassigned protein
• FL-Next: sp=Zinc finger CCCH domain-containing protein 42; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene152941 SustainPine v3.0 505
• AutoFact: Zinc finger protein, putative n=2 Tax=Entamoeba RepID=C4M0P1_ENTHI 8.0e-28
• FL-Next: sp=Zinc finger CCCH domain-containing protein 39; Oryza sativa subsp. japonica (Rice). 0.0
Putative C-terminus
sp_v3.0_unigene153704 SustainPine v3.0 236
• AutoFact: Probable serine/threonine-protein kinase ireA n=1 Tax=Dictyostelium discoideum RepID=IREA_DICDI 2.0e-18
• FL-Next: tr=Putative uncharacterized protein; Chlorella variabilis (Green alga). 0.0
• Sma3: Key regulator in ER unfolded protein response 9.747e-06
Internal
sp_v3.0_unigene154424 SustainPine v3.0 181
• AutoFact: Unassigned protein
• FL-Next: sp=Zinc finger CCCH domain-containing protein 42; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene154723 SustainPine v3.0 365
• AutoFact: U2 small nuclear RNA auxiliary factor 1 (Fragment) n=1 Tax=Microcosmus squamiger RepID=E3PQY0_9ASCI 9.99967e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U2 snrnp auxiliary factor, small subunit, putative 1.517e-11
Internal
sp_v3.0_unigene155868 SustainPine v3.0 357
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene156881 SustainPine v3.0 331
• AutoFact: TIDP3207; LOC100285059; K12872 pre-mRNA-splicing factor RBM22/SLT11 3.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RRM-containing RNA-binding protein-like protein 6.985e-09
Putative N-terminus
sp_v3.0_unigene158840 SustainPine v3.0 413
• AutoFact: ATP-binding cassette transporter [Pteris vittata] 2.00386e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ABC transporter 7.78e-11
Internal
sp_v3.0_unigene162836 SustainPine v3.0 322
• AutoFact: RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb|AEE76829.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] 4.0e-07
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene163632 SustainPine v3.0 414
• AutoFact: zinc finger CCCH domain-containing protein 36 [Arabidopsis thaliana] sp|Q9C7C3.1|C3H36_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 36; Short=AtC3H36 gb|AAG51040.1|AC069473_2 unknown protein; 15726-17646 [Arabidopsis thaliana] gb|AAM6296 5.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene164071 SustainPine v3.0 341
• AutoFact: Zinc finger CCCH domain-containing protein 15 n=3 Tax=Arabidopsis RepID=C3H15_ARATH 8.0e-32
• FL-Next: Isoform 2 of Zinc finger CCCH domain-containing protein 15 OS=Arabidopsis thaliana GN=At1g68200 0.0
Internal
sp_v3.0_unigene165805 SustainPine v3.0 476
• AutoFact: Splicing factor U2af small subunit B [Arabidopsis thaliana] ref|NP_974870.1| Splicing factor U2af small subunit B [Arabidopsis thaliana] sp|Q9FMY5.1|U2AFB_ARATH RecName: Full=Splicing factor U2af small subunit B; AltName: Full=U2 auxiliary factor 35 kDa s 4.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.746e-11
N-terminus
sp_v3.0_unigene165899 SustainPine v3.0 467
• AutoFact: putative LRR receptor-like serine/threonine-protein kinase [Arabidopsis thaliana] sp|C0LGG7.2|Y1534_ARATH RecName: Full=Probable LRR receptor-like serine/threonine-protein kinase At1g53420; Flags: Precursor gb|AEE32938.1| putative LRR receptor-like serine 5.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome chr19 scaffold_4, whole genome shotgun sequence 1.96e-13
Putative N-terminus
sp_v3.0_unigene166158 SustainPine v3.0 276
• AutoFact: zinc finger CCCH domain-containing protein 64 [Arabidopsis thaliana] sp|Q84WU9.1|C3H64_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 64; Short=AtC3H64 gb|AAO22569.1| unknown protein [Arabidopsis thaliana] gb|AED96821.1| zinc finger CCCH d 1.0e-18
• FL-Next: sp=Zinc finger CCCH domain-containing protein 64; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene166753 SustainPine v3.0 128
• AutoFact: Splicing factor U2AF 26 kDa subunit n=2 Tax=Agaricales RepID=A8N5I3_COPC7 6.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.196e-11
N-terminus
sp_v3.0_unigene167100 SustainPine v3.0 239
• AutoFact: [J] COG5099 RNA-binding protein of the Puf family, translational repressor 9.0e-11
• FL-Next: sp=Pumilio homolog 12; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Pumilio-family RNA binding repeat containing protein, expressed 7.503e-12
Internal
sp_v3.0_unigene167195 SustainPine v3.0 293
• AutoFact: zinc finger CCCH domain-containing protein 46 [Arabidopsis thaliana] ref|NP_001030840.1| zinc finger CCCH domain-containing protein 46 [Arabidopsis thaliana] sp|Q9SV09.1|C3H46_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 46; Short=AtC3H4 7.0e-18
• FL-Next: sp=Zinc finger CCCH domain-containing protein 46; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene167829 SustainPine v3.0 306
• AutoFact: ATP-binding cassette transporter, subfamily D, member 2, group PMP protein PpABCD2 (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SSI7_PHYPA 1.0e-20
• FL-Next: sp=ABC transporter D family member 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene167954 SustainPine v3.0 220
• AutoFact: receptor ser/thr protein kinase-like [Oryza sativa Japonica Group] dbj|BAD25902.1| receptor ser/thr protein kinase-like [Oryza sativa Japonica Group] 7.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome undetermined scaffold_302, whole genome shotgun sequence 6.089e-08
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain