Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, CCCH-type

Term: IPR000571  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene135900 SustainPine v3.0 423
AutoFact: E3 ubiquitin-protein ligase makorin n=3 Tax=Oryza sativa RepID=C3H41_ORYSJ 4.0e-20
FL-Next: sp=E3 ubiquitin-protein ligase makorin; Oryza sativa subsp. japonica (Rice). 0.0
C-terminus
sp_v3.0_unigene135990 SustainPine v3.0 298
AutoFact: [RTKL] COG0515 Serine/threonine protein kinase 6.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine/threonine-protein kinase receptor 8.815e-11
Internal
sp_v3.0_unigene136011 SustainPine v3.0 245
AutoFact: ABC transporter homolog [Populus nigra] 9.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ABC transporter family protein 4.354e-06
Misassembled
sp_v3.0_unigene137151 SustainPine v3.0 230
AutoFact: ATP-binding cassette sub-family f member 2 [Oryza sativa Indica Group] 2.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP-binding cassette superfamily 1.756e-09
Internal
sp_v3.0_unigene138876 SustainPine v3.0 281
AutoFact: RecName: Full=Zinc finger CCCH domain-containing protein 4; Short=OsC3H4 dbj|BAE95808.1| ATP-dependent RNA helicase A -like [Oryza sativa Japonica Group] 2.0e-13
FL-Next: sp=Zinc finger CCCH domain-containing protein 4; Oryza sativa subsp. japonica (Rice). 0.0
Putative C-terminus
sp_v3.0_unigene139561 SustainPine v3.0 513
AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9SL49_RICCO 4.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene139862 SustainPine v3.0 250
AutoFact: CCCH-type Zn-finger protein (ISS) n=1 Tax=Ostreococcus tauri RepID=Q01CM9_OSTTA 1.0e-26
FL-Next: sp=Zinc finger CCCH domain-containing protein 39; Oryza sativa subsp. japonica (Rice). 0.0
C-terminus
sp_v3.0_unigene140437 SustainPine v3.0 1020
AutoFact: Putative U2 snRNP auxiliary factor (Fragment) n=1 Tax=Chenopodium rubrum RepID=Q1H8Q9_CHERU 9.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Splicing factor U2af 38 kDa subunit 2.9e-08
Internal
sp_v3.0_unigene140578 SustainPine v3.0 716
AutoFact: zinc finger CCCH domain-containing protein 36 [Arabidopsis thaliana] sp|Q9C7C3.1|C3H36_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 36; Short=AtC3H36 gb|AAG51040.1|AC069473_2 unknown protein; 15726-17646 [Arabidopsis thaliana] gb|AAM6296 1.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene140843 SustainPine v3.0 479
AutoFact: ATP-binding cassette transporter, subfamily F, member 4, SmABCF4 n=2 Tax=Selaginella moellendorffii RepID=D8SD10_SELML 1.99965e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP-dependent transporter, putative 2.553e-10
Internal
sp_v3.0_unigene140869 SustainPine v3.0 391
AutoFact: Unassigned protein
FL-Next: sp=Zinc finger CCCH domain-containing protein 23; Oryza sativa subsp. japonica (Rice). 0.0
N-terminus
sp_v3.0_unigene141023 SustainPine v3.0 312
AutoFact: Unassigned protein
FL-Next: sp=Zinc finger CCCH domain-containing protein 46; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene141739 SustainPine v3.0 143
AutoFact: protein kinase-like protein [Arabidopsis thaliana] gb|AAG51561.1|AC027034_7 protein kinase, putative; 86372-89112 [Arabidopsis thaliana] gb|AAL36319.1| putative protein kinase [Arabidopsis thaliana] gb|AAM20044.1| putative protein kinase [Arabidopsis thal 1.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP binding protein, putative 4.938e-19
Internal
sp_v3.0_unigene148530 SustainPine v3.0 293
AutoFact: Phototropic-responsive NPH3 family protein [Arabidopsis thaliana] sp|Q9SA69.1|Y1301_ARATH RecName: Full=BTB/POZ domain-containing protein At1g03010 gb|AAD25808.1|AC006550_16 F10O3.17 [Arabidopsis thaliana] gb|AEE27514.1| Phototropic-responsive NPH3 family 4.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Root phototropism protein, putative 1.1e-07
Internal
sp_v3.0_unigene148602 SustainPine v3.0 318
AutoFact: NPH3 domain containing protein 8.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Photoreceptor-interacting protein-like 1.245e-18
Internal
sp_v3.0_unigene148750 SustainPine v3.0 395
AutoFact: Unassigned protein 1.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene148911 SustainPine v3.0 337
AutoFact: NPH3 domain containing protein 3.99931e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Transposon protein Mutator sub-class 2.816e-16
Internal
sp_v3.0_unigene149759 SustainPine v3.0 397
AutoFact: [RTKL] COG0515 Serine/threonine protein kinase 1.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative Receptor-like serine/threonine kinase(RFK1) 1.772e-12
Internal
sp_v3.0_unigene150011 SustainPine v3.0 342
AutoFact: cleavage and polyadenylation specificity factor CPSF30 [Arabidopsis thaliana] gb|AAF19747.1|AC009917_6 Contains similarity to gb|U96448 cleavage and polyadenylation specificity factor 30 kDa from Bos taurus [Arabidopsis thaliana] gb|AAN41459.1| putative c 0.0
FL-Next: Isoform 2 of Cleavage and polyadenylation specificity factor CPSF30 OS=Arabidopsis thaliana GN=CPSF30 0.0
Internal
sp_v3.0_unigene150867 SustainPine v3.0 323
AutoFact: Very similar to receptor-like serine/threonine kinase [Arabidopsis thaliana] 8.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative Receptor-like serine/threonine kinase(RFK1) 1.327e-12
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain