Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, CCCH-type

Term: IPR000571  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene121257 SustainPine v3.0 443
AutoFact: receptor protein kinase, putative [Arabidopsis thaliana] 6.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome undetermined scaffold_302, whole genome shotgun sequence 4.861e-11
Internal
sp_v3.0_unigene123074 SustainPine v3.0 421
AutoFact: RecName: Full=Zinc finger CCCH domain-containing protein 4; Short=OsC3H4 dbj|BAE95808.1| ATP-dependent RNA helicase A -like [Oryza sativa Japonica Group] 4.0e-33
FL-Next: sp=Zinc finger CCCH domain-containing protein 4; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene124542 SustainPine v3.0 282
AutoFact: Contains similarity to RNA binding protein PufA from Dictyostelium discoideum gi|5106561 and contains multiple Pumilio-family RNA binding PF|00806 domains [Arabidopsis thaliana] 3.0e-25
FL-Next: sp=Putative pumilio homolog 8, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Pumilio-family RNA binding repeat containing protein, expressed 9.84e-12
Internal
sp_v3.0_unigene124604 SustainPine v3.0 353
AutoFact: AAA ATPase; ABC transporter, transmembrane region, type 1 n=1 Tax=Medicago truncatula RepID=A2Q3K0_MEDTR 3.00004e-41
FL-Next: sp=ABC transporter D family member 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene125273 SustainPine v3.0 302
AutoFact: Protein kinase n=4 Tax=Andropogoneae RepID=B6SY15_MAIZE 6.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP binding protein, putative 8.681e-13
Internal
sp_v3.0_unigene126154 SustainPine v3.0 235
AutoFact: ABC transporter D family member 2, chloroplastic n=2 Tax=Arabidopsis RepID=AB2D_ARATH 7.0e-13
FL-Next: sp=ABC transporter D family member 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-binding cassette superfamily 2.192e-07
Internal
sp_v3.0_unigene128180 SustainPine v3.0 662
AutoFact: Protein kinase family protein n=1 Tax=Glycine max RepID=C6ZRR0_SOYBN 6.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine/threonine-protein kinase receptor 2.64e-17
C-terminus
sp_v3.0_unigene128418 SustainPine v3.0 513
AutoFact: Zinc finger, CCCH-type n=1 Tax=Medicago truncatula RepID=A2Q3L5_MEDTR 7.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene128980 SustainPine v3.0 299
AutoFact: Unassigned protein 1.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Misassembled
sp_v3.0_unigene129095 SustainPine v3.0 259
AutoFact: zinc finger CCCH domain-containing protein 46 [Arabidopsis thaliana] ref|NP_001030840.1| zinc finger CCCH domain-containing protein 46 [Arabidopsis thaliana] sp|Q9SV09.1|C3H46_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 46; Short=AtC3H4 5.0e-13
FL-Next: sp=Zinc finger CCCH domain-containing protein 46; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene130733 SustainPine v3.0 454
AutoFact: cysteine-rich receptor-like protein kinase 3 [Arabidopsis thaliana] sp|Q9CAL2.1|CRK3_ARATH RecName: Full=Cysteine-rich receptor-like protein kinase 3; Short=Cysteine-rich RLK3; Flags: Precursor gb|AAG52470.1|AC010796_9 putative protein kinase; 41292-38663 4.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Receptor serine-threonine protein kinase, putative 1.147e-07
Internal
sp_v3.0_unigene131037 SustainPine v3.0 461
AutoFact: zinc finger CCCH domain-containing protein 22 [Arabidopsis thaliana] sp|Q9SK49.1|C3H22_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 22; Short=AtC3H22 gb|AAD23029.1| hypothetical protein [Arabidopsis thaliana] dbj|BAF01059.1| hypothetical 1.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene131187 SustainPine v3.0 641
AutoFact: Protein kinase family protein n=1 Tax=Glycine max RepID=C6ZRR0_SOYBN 3.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine/threonine-protein kinase receptor 1.986e-11
C-terminus
sp_v3.0_unigene131369 SustainPine v3.0 520
AutoFact: receptor ser/thr protein kinase-like [Oryza sativa Japonica Group] dbj|BAD25902.1| receptor ser/thr protein kinase-like [Oryza sativa Japonica Group] 9.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine/threonine-protein kinase receptor 2.502e-11
Internal
sp_v3.0_unigene131378 SustainPine v3.0 336
AutoFact: putative receptor ser/thr protein [Oryza sativa Japonica Group] gb|ABF95119.1| Protein kinase domain containing protein, expressed [Oryza sativa Japonica Group] 5.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine/threonine-protein kinase receptor 7.691e-11
Internal
sp_v3.0_unigene131612 SustainPine v3.0 530
AutoFact: U2 auxiliary factor small subunit [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.089e-11
Putative N-terminus
sp_v3.0_unigene132077 SustainPine v3.0 459
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene132816 SustainPine v3.0 493
AutoFact: Zinc finger, CCCH-type; Sugar transporter superfamily [Medicago truncatula] 2.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Zinc finger CCCH type domain-containing protein ZFN-like 3 4.422e-08
Internal
sp_v3.0_unigene133112 SustainPine v3.0 707
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene133328 SustainPine v3.0 522
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SAR2_RICCO 0.0
FL-Next: sp=Zinc finger CCCH domain-containing protein 4; Oryza sativa subsp. japonica (Rice). 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain