Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, CCCH-type

Term: IPR000571  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene99920 SustainPine v3.0 844
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SBN7_RICCO 0.0
FL-Next: sp=Pumilio homolog 12; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Pumilio-family RNA binding repeat containing protein, expressed 2.023e-11
Internal
sp_v3.0_unigene99931 SustainPine v3.0 1851
AutoFact: ABC transporter family protein n=2 Tax=Malpighiales RepID=B9GL16_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ABC transporter 3.856e-15
Complete
sp_v3.0_unigene99977 SustainPine v3.0 438
AutoFact: zinc finger CCCH domain-containing protein 65 [Arabidopsis thaliana] sp|Q9LTS7.1|C3H65_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 65; Short=AtC3H65; AltName: Full=Protein EMBRYO DEFECTIVE 1789 dbj|BAA97023.1| unnamed protein product [A 3.0e-16
FL-Next: sp=Zinc finger CCCH domain-containing protein 65; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene100436 SustainPine v3.0 344
AutoFact: zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana] dbj|BAB11046.1| unnamed protein product [Arabidopsis thaliana] gb|AED96154.1| zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana] 2.0e-15
FL-Next: sp=Zinc finger CCCH domain-containing protein 17; Oryza sativa subsp. japonica (Rice). 0.0
C-terminus
sp_v3.0_unigene101474 SustainPine v3.0 649
AutoFact: DUF1777 domain containing protein 4.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Zinc finger C-x8-C-x5-C-x3-H type family protein 4.538e-08
N-terminus
sp_v3.0_unigene102059 SustainPine v3.0 677
AutoFact: Unassigned protein
FL-Next: sp=Zinc finger CCCH domain-containing protein 41; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene103176 SustainPine v3.0 510
AutoFact: zinc finger CCCH domain-containing protein 6 [Arabidopsis thaliana] sp|Q56XU4.1|C3H6_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 6; Short=AtC3H6 dbj|BAD95060.1| hypothetical protein [Arabidopsis thaliana] gb|ABF58975.1| At1g19860 [Arabi 9.0e-18
FL-Next: sp=Zinc finger CCCH domain-containing protein 30; Oryza sativa subsp. japonica (Rice). 0.0
N-terminus
sp_v3.0_unigene103243 SustainPine v3.0 708
AutoFact: Ank_2 domain containing protein 3.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene103932 SustainPine v3.0 366
AutoFact: Unassigned protein 2.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene104077 SustainPine v3.0 525
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Zn-finger transcription factor 1.563e-14
Internal
sp_v3.0_unigene104535 SustainPine v3.0 366
AutoFact: endoribonuclease/protein kinase IRE1 [Arabidopsis thaliana] 3.0e-39
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene104697 SustainPine v3.0 366
AutoFact: Zinc finger, CCCH-type n=1 Tax=Medicago truncatula RepID=A2Q3L5_MEDTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Zn-finger transcription factor 1.809e-14
Internal
sp_v3.0_unigene104752 SustainPine v3.0 483
AutoFact: SWIB/MDM2 and Plus-3 and GYF domain-containing protein [Arabidopsis thaliana] sp|Q9FT92.2|Y5843_ARATH RecName: Full=Uncharacterized protein At5g08430 gb|ACF06124.1| At5g08430 [Arabidopsis thaliana] gb|AED91300.1| SWIB/MDM2 and Plus-3 and GYF domain-contai 3.0e-23
FL-Next: sp=Zinc finger CCCH domain-containing protein 19; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene104784 SustainPine v3.0 460
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SSJ9_RICCO 2.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene104893 SustainPine v3.0 561
AutoFact: zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana] sp|Q9FNZ1.1|C3H63_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 63; Short=AtC3H63; AltName: Full=Zinc finger CCCH domain and WD40 repeat-containing protein 2 emb|CAC1984 7.00005e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene105605 SustainPine v3.0 360
AutoFact: zinc finger (CCCH-type) protein-like [Oryza sativa Japonica Group] 7.0e-15
FL-Next: sp=Zinc finger CCCH domain-containing protein 7; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene106598 SustainPine v3.0 496
AutoFact: DNA mismatch repair protein PMS2 [Arabidopsis thaliana] gb|AAL01156.1| DNA mismatch repair protein [Arabidopsis thaliana] gb|AEE82175.1| DNA mismatch repair protein PMS2 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Internal
sp_v3.0_unigene106710 SustainPine v3.0 296
AutoFact: DUF1777 multi-domain protein 6.0e-10
coding
sp_v3.0_unigene107837 SustainPine v3.0 370
AutoFact: [J] COG5099 RNA-binding protein of the Puf family, translational repressor 7.0e-22
FL-Next: sp=Pumilio homolog 12; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Pumilio-family RNA binding repeat containing protein, expressed 7.437e-08
Putative C-terminus
sp_v3.0_unigene108688 SustainPine v3.0 473
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SSJ9_RICCO 1.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain