Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA helicase, ATP-dependent, DEAD-box, conserved site

Term: IPR000629  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene39153 SustainPine v3.0 166
• AutoFact: putative DEAD box-like RNA helicase [Oryza sativa Japonica Group] dbj|BAD19277.1| putative DEAD box-like RNA helicase [Oryza sativa Japonica Group] 1.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 1 6.773e-09
N-terminus
sp_v3.0_unigene39212 SustainPine v3.0 645
• AutoFact: Cytochrome P450 704C1 n=1 Tax=Pinus taeda RepID=C04C1_PINTA 0.0
• FL-Next: sp=Cytochrome P450 704C1; Pinus taeda (Loblolly pine). 0.0
• Sma3: Cytochrome P450 1.428e-29
C-terminus
sp_v3.0_unigene39643 SustainPine v3.0 678
• AutoFact: DEAD-box ATP-dependent RNA helicase 52B n=3 Tax=Oryza sativa RepID=RH52B_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 7.087e-14
Putative N-terminus
sp_v3.0_unigene39693 SustainPine v3.0 1615
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXM6_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Polyprotein 1.423e-12
C-terminus
sp_v3.0_unigene40017 SustainPine v3.0 283
• AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 1.0e-23
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 4.234e-36
Internal
sp_v3.0_unigene40050 SustainPine v3.0 261
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome undetermined scaffold_342, whole genome shotgun sequence 1.376e-09
Putative Complete
sp_v3.0_unigene40492 SustainPine v3.0 2795
• AutoFact: subtilisin-like serine protease 2 [Arabidopsis thaliana] emb|CAA17763.1| subtilisin proteinase-like [Arabidopsis thaliana] emb|CAB80215.1| subtilisin proteinase-like [Arabidopsis thaliana] gb|AAL67071.1| putative subtilisin serine protease [Arabidopsis th 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Subtilisin-like protease 0.0
Complete
sp_v3.0_unigene41149 SustainPine v3.0 264
• AutoFact: DUF1777 multi-domain protein 2.0e-09
coding
sp_v3.0_unigene41166 SustainPine v3.0 351
coding
sp_v3.0_unigene43063 SustainPine v3.0 717
• AutoFact: similar to ATP-dependent RNA helicase [Arabidopsis thaliana] gb|AAM48010.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] 4.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene43230 SustainPine v3.0 121
• AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SW84_RICCO 6.0e-14
• FL-Next: sp=DEAD-box ATP-dependent RNA helicase 42; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 42 5.167e-09
Internal
sp_v3.0_unigene44374 SustainPine v3.0 578
• AutoFact: DEAD-box ATP-dependent RNA helicase 42 [Arabidopsis thaliana] sp|Q8H0U8.2|RH42_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 42 gb|AAD30599.1|AC007369_9 Similar to RNA helicases [Arabidopsis thaliana] gb|AEE30040.1| DEAD-box ATP-dependent RNA he 2.0e-26
• FL-Next: sp=DEAD-box ATP-dependent RNA helicase 42; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 45 4.49e-09
Internal
sp_v3.0_unigene44557 SustainPine v3.0 705
• AutoFact: subtilisin-like protease [Glycine max] 1.99993e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Xylem serine proteinase 1, putative 3.472e-32
Internal
sp_v3.0_unigene45238 SustainPine v3.0 197
• AutoFact: Eukaryotic initiation factor 4A-like protein n=2 Tax=Chlamydomonadales RepID=A8IP17_CHLRE 1.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 7.358e-06
Internal
sp_v3.0_unigene46112 SustainPine v3.0 795
• AutoFact: DEAD-box ATP-dependent RNA helicase 35 [Arabidopsis thaliana] sp|Q9LU46.1|RH35_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 35 dbj|BAA97391.1| DEAD-box protein abstrakt [Arabidopsis thaliana] dbj|BAE98527.1| DEAD-box protein abstrakt [Arabidops 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 1.135e-19
C-terminus
sp_v3.0_unigene47214 SustainPine v3.0 147
• AutoFact: Cofactor-independent phosphoglyceromutase n=1 Tax=Apium graveolens RepID=Q9SDL3_APIGR 2.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2.625e-20
Internal
sp_v3.0_unigene47351 SustainPine v3.0 346
• AutoFact: DEAD-box ATP-dependent RNA helicase 24 [Arabidopsis thaliana] sp|O22907.2|RH24_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 24 gb|AAL15330.1| At2g47330/T8I13.17 [Arabidopsis thaliana] gb|AAB63833.2| putative ATP-dependent RNA helicase [Arabidop 4.00001e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 24 1.008e-07
Putative C-terminus
sp_v3.0_unigene47812 SustainPine v3.0 1393
• AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SW84_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 45 3.944e-08
C-terminus
sp_v3.0_unigene49513 SustainPine v3.0 4243
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXM6_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.186e-15
Complete
sp_v3.0_unigene49757 SustainPine v3.0 584
• AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SW84_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 45 2.114e-07
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain