Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Cold-shock protein, DNA-binding

Term: IPR002059  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene77881 SustainPine v3.0 349
AutoFact: Proteasome subunit beta type n=4 Tax=Caenorhabditis RepID=Q966I8_CAEEL 5.0e-35
FL-Next: sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene85135 SustainPine v3.0 289
AutoFact: GRP multi-domain protein 9.0e-10
coding
sp_v3.0_unigene85926 SustainPine v3.0 265
AutoFact: Trypan_PARP multi-domain protein 9.0e-16
Sma3: Transposon protein, putative, CACTA, En/Spm sub-class, expressed 1.186e-19
coding
sp_v3.0_unigene86946 SustainPine v3.0 393
AutoFact: 5'-3' exoribonuclease 2 n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NWF9_COPC7 5.0e-14
coding
sp_v3.0_unigene95622 SustainPine v3.0 592
AutoFact: plastocyanin-like domain-containing protein [Arabidopsis thaliana] gb|AAB95306.1| putative phytocyanin [Arabidopsis thaliana] gb|AEC07879.1| plastocyanin-like domain-containing protein [Arabidopsis thaliana] 6.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative glycine-rich cell wall structural protein 1.958e-07
N-terminus
sp_v3.0_unigene142008 SustainPine v3.0 359
AutoFact: Probable fibrillarin (Fragment) n=2 Tax=Picea RepID=O65058_PICMA 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Fibrillarin, putative 6.336e-08
Putative N-terminus
sp_v3.0_unigene152234 SustainPine v3.0 362
AutoFact: putative Glycine-rich protein 2 [Oryza sativa Japonica Group] dbj|BAD07599.1| putative Glycine-rich protein 2 [Oryza sativa Japonica Group] gb|EAZ21537.1| hypothetical protein OsJ_05164 [Oryza sativa Japonica Group] gb|ACD13288.1| cold shock domain protei 1.0e-17
FL-Next: tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Cold-shock protein with RNA binding domain 4.714e-08
Putative N-terminus
sp_v3.0_unigene153695 SustainPine v3.0 302
AutoFact: Proteasome subunit beta type-6 n=1 Tax=Salpingoeca sp. ATCC 50818 RepID=F2U198_9EUKA 1.0e-23
FL-Next: sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Proteasome subunit beta type-6 4.578e-08
Putative C-terminus
sp_v3.0_unigene154741 SustainPine v3.0 200
AutoFact: Zinc knuckle domain protein n=1 Tax=Metarhizium anisopliae ARSEF 23 RepID=E9ER74_METAR 5.0e-08
FL-Next: tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Putative C-terminus
sp_v3.0_unigene156634 SustainPine v3.0 335
AutoFact: Proteasome subunit beta type n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9CF12_9EUKA 1.0e-33
FL-Next: sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Proteasome subunit beta type-6 9.054e-08
N-terminus
sp_v3.0_unigene157045 SustainPine v3.0 299
AutoFact: Proteasome subunit beta type n=1 Tax=Naegleria gruberi RepID=D2UXF6_NAEGR 1.0e-28
FL-Next: sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Proteasome subunit beta type-6 8.406e-08
N-terminus
sp_v3.0_unigene158079 SustainPine v3.0 269
AutoFact: Proteasome subunit beta type n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9CF12_9EUKA 7.0e-24
FL-Next: sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Proteasome subunit beta type-6 6.824e-08
N-terminus
sp_v3.0_unigene158649 SustainPine v3.0 382
AutoFact: Proteasome subunit beta type 6 n=1 Tax=Dictyostelium fasciculatum RepID=F4Q3J1_9MYCE 8.0e-40
FL-Next: sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Proteasome subunit beta type-6 9.004e-08
N-terminus
sp_v3.0_unigene158689 SustainPine v3.0 405
AutoFact: Cold shock protein (Beta-ribbon, CspA family) n=1 Tax=Pseudomonas fluorescens WH6 RepID=E2XMQ1_PSEFL 5.0e-27
FL-Next: tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca). 0.0
N-terminus
sp_v3.0_unigene169019 SustainPine v3.0 271
AutoFact: Gly_rich multi-domain protein 7.0e-17
Sma3: Glycine-rich RNA-binding protein 2.56e-14
coding
sp_v3.0_unigene169684 SustainPine v3.0 327
AutoFact: GRP multi-domain protein 3.0e-16
Sma3: Glycine-rich protein 2.897e-16
coding
sp_v3.0_unigene170036 SustainPine v3.0 237
AutoFact: GRP multi-domain protein 1.0e-10
Sma3: Putative glycine-rich protein 2.016e-08
coding
sp_v3.0_unigene171386 SustainPine v3.0 283
AutoFact: Herpes_gp2 multi-domain protein 2.0e-14
Sma3: Glycine-rich protein 9.342e-12
coding
sp_v3.0_unigene172836 SustainPine v3.0 507
AutoFact: Gly_rich multi-domain protein 5.0e-20
Sma3: Glycine-rich protein 1.685e-10
coding
sp_v3.0_unigene173381 SustainPine v3.0 520
AutoFact: Gly_rich multi-domain protein 6.0e-19
Sma3: Putative glycine rich protein 3.78e-18
coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain