Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Beta tubulin, autoregulation binding site

Term: IPR013838  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene16247 SustainPine v3.0 423
AutoFact: Copper-transporting atpase p-type, putative n=1 Tax=Ricinus communis RepID=B9RC99_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Heavy metal ATPase 6.454e-18
Internal
sp_v3.0_unigene16716 SustainPine v3.0 693
AutoFact: Prefoldin subunit, putative n=1 Tax=Ricinus communis RepID=B9RTR3_RICCO 8.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene17094 SustainPine v3.0 2167
AutoFact: Tubulin beta-4 chain n=11 Tax=Eukaryota RepID=TBB4_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Tubulin beta chain 5.726e-12
Complete
sp_v3.0_unigene17135 SustainPine v3.0 2083
AutoFact: Tubulin beta-4 chain n=11 Tax=Eukaryota RepID=TBB4_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Tubulin beta chain 5.726e-12
Complete
sp_v3.0_unigene17199 SustainPine v3.0 2078
AutoFact: Tubulin beta-4 chain n=11 Tax=Eukaryota RepID=TBB4_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Tubulin beta chain 5.726e-12
Complete
sp_v3.0_unigene17744 SustainPine v3.0 1558
AutoFact: CTC-interacting domain 9 protein [Arabidopsis thaliana] dbj|BAB01337.1| unnamed protein product [Arabidopsis thaliana] gb|AEE75527.1| CTC-interacting domain 9 protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: CID11 3.11e-16
Complete
sp_v3.0_unigene18150 SustainPine v3.0 1431
AutoFact: exosome complex component RRP4 [Arabidopsis thaliana] gb|AAC72108.1| Similar to hypothetical protein SPAC2F7.14c gi|1052797 from Schizosaccharomyces pombe cosmid gb|Z50142 [Arabidopsis thaliana] gb|AAQ65156.1| At1g03360 [Arabidopsis thaliana] dbj|BAD43995 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene18319 SustainPine v3.0 2836
AutoFact: NAC domain containing protein 28 [Arabidopsis thaliana] gb|AAF06052.1|AC009513_8 Contains similarity to gb|AF123310 NAC domain protein NAM gene from Arabidopsis thaliana gb|AEE34440.1| NAC domain containing protein 28 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: NAC domain protein, IPR003441 0.0
Complete
sp_v3.0_unigene18388 SustainPine v3.0 562
AutoFact: Tubulin beta-4 chain n=11 Tax=Eukaryota RepID=TBB4_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Beta-tubulin 2.158e-13
N-terminus
sp_v3.0_unigene18421 SustainPine v3.0 480
AutoFact: Beta tubulin (Fragment) n=4 Tax=Tetrapoda RepID=Q60456_CRIGR 1.0e-06
FL-Next: tr=Beta-tubulin 2; Nicotiana tabacum (Common tobacco). 0.0
Sma3: Tubulin beta chain 7.745e-12
Complete
sp_v3.0_unigene18491 SustainPine v3.0 1743
AutoFact: Phosphatidic acid phosphatase, putative n=1 Tax=Ricinus communis RepID=B9SQ05_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Phosphatidic acid phosphatase, putative 3.937e-12
Complete
sp_v3.0_unigene18536 SustainPine v3.0 877
AutoFact: NAM-like protein [Arabidopsis thaliana] gb|AAN15611.1| NAM-like protein [Arabidopsis thaliana] 2.00386e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: NAC domain protein, IPR003441 0.0
Putative Complete
sp_v3.0_unigene18783 SustainPine v3.0 872
AutoFact: NAC transcription factor NAM-D2 [Aegilops tauschii] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: NAC domain protein, IPR003441 0.0
N-terminus
sp_v3.0_unigene19260 SustainPine v3.0 368
AutoFact: cysteine-rich receptor-like protein kinase 13 [Arabidopsis thaliana] sp|Q0PW40.1|CRK13_ARATH RecName: Full=Cysteine-rich receptor-like protein kinase 13; Short=Cysteine-rich RLK13; Flags: Precursor gb|ABG74916.1| cysteine-rich receptor-like kinase 13 [Ara 1.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr19 scaffold_4, whole genome shotgun sequence 1.105e-13
Internal
sp_v3.0_unigene19605 SustainPine v3.0 1083
AutoFact: DUF588 multi-domain protein 7.0e-17
FL-Next: sp=CASP-like protein 1; Pinus contorta (Shore pine) (Lodgepole pine). 0.0
Complete
sp_v3.0_unigene20354 SustainPine v3.0 1867
AutoFact: NAC protein 1 [Elaeis guineensis] gb|ABB72844.1| NAC protein 1 splice variant 2 [Elaeis guineensis] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: NAC domain protein, IPR003441 3.1277e-42
Complete
sp_v3.0_unigene20611 SustainPine v3.0 806
AutoFact: 60S ribosomal protein L11-1 n=51 Tax=Embryophyta RepID=RL111_ARATH 6.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L11 2.499e-11
Misassembled
sp_v3.0_unigene21350 SustainPine v3.0 1586
AutoFact: RecName: Full=Cytochrome P450 720B2; AltName: Full=Cytochrome P450 CYPB gb|AAX07432.1| cytochrome P450 CYPB [Pinus taeda] 0.0
FL-Next: tr=CYP720B2; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene21397 SustainPine v3.0 1618
AutoFact: exosome complex component RRP4 [Arabidopsis thaliana] gb|AAC72108.1| Similar to hypothetical protein SPAC2F7.14c gi|1052797 from Schizosaccharomyces pombe cosmid gb|Z50142 [Arabidopsis thaliana] gb|AAQ65156.1| At1g03360 [Arabidopsis thaliana] dbj|BAD43995 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene21410 SustainPine v3.0 1637
AutoFact: Tubulin beta-4 chain n=11 Tax=Eukaryota RepID=TBB4_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Tubulin, beta chain 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain