Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Transcription factor GRAS

Term: IPR005202  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene16695 SustainPine v3.0 362
• AutoFact: SCARECROW n=1 Tax=Pinus sylvestris RepID=Q0MRQ2_PINSY 5.0e-38
• FL-Next: tr=SCARECROW; Pinus sylvestris (Scots pine). 0.0
• Sma3: Protein SCARECROW 5.351e-17
C-terminus
sp_v3.0_unigene26812 SustainPine v3.0 2693
• AutoFact: Scarecrow-like 1 transcription factor (Fragment) n=1 Tax=Pinus pinaster RepID=B1PPU0_PINPS 0.0
• FL-Next: sp=Scarecrow-like transcription factor PAT1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Scarecrow-like 1 transcription factor 0.0
Complete
sp_v3.0_unigene30541 SustainPine v3.0 1255
• AutoFact: Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH 1.96182e-44
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Copia-type polyprotein 9.491e-11
C-terminus
sp_v3.0_unigene33049 SustainPine v3.0 854
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXM6_ORYSJ 0.0
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.447e-16
C-terminus
sp_v3.0_unigene33530 SustainPine v3.0 1158
• AutoFact: Unassigned protein
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 2.055e-18
C-terminus
sp_v3.0_unigene37064 SustainPine v3.0 357
• AutoFact: Unassigned protein
• FL-Next: sp=UNC93-like protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene37720 SustainPine v3.0 2114
• AutoFact: Scarecrow-like 1 transcription factor (Fragment) n=1 Tax=Pinus pinaster RepID=B1PPU0_PINPS 0.0
• FL-Next: sp=Scarecrow-like transcription factor PAT1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Scarecrow-like 1 transcription factor 0.0
Complete
sp_v3.0_unigene38184 SustainPine v3.0 440
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene38587 SustainPine v3.0 1110
• AutoFact: Putative gag-pol polyprotein, identical n=1 Tax=Solanum demissum RepID=Q6L3N8_SOLDE 0.0
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.271e-19
C-terminus
sp_v3.0_unigene38619 SustainPine v3.0 1996
• AutoFact: Copia-type polyprotein, putative n=4 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.781e-12
C-terminus
sp_v3.0_unigene38921 SustainPine v3.0 438
• AutoFact: Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic n=1 Tax=Medicago truncatula RepID=Q2HU05_MEDTR 3.00004e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 3.41917e-43
N-terminus
sp_v3.0_unigene41194 SustainPine v3.0 371
• AutoFact: Putative polyprotein n=1 Tax=Solanum lycopersicum RepID=Q0PY40_SOLLC 3.0e-24
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Internal
sp_v3.0_unigene43067 SustainPine v3.0 314
• AutoFact: GRAS family transcription factor n=1 Tax=Populus trichocarpa RepID=B9GYX5_POPTR 9.0e-21
• FL-Next: sp=Scarecrow-like protein 32; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: GRAS family transcription factor 6.375e-12
N-terminus
sp_v3.0_unigene47997 SustainPine v3.0 404
• AutoFact: RVT_2 domain containing protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.086e-25
N-terminus
sp_v3.0_unigene51652 SustainPine v3.0 464
• AutoFact: Gag-pol polyprotein n=7 Tax=Glycine max RepID=Q84VH6_SOYBN 9.0e-38
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 4.407e-34
C-terminus
sp_v3.0_unigene53814 SustainPine v3.0 350
• AutoFact: Putative copia-type polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q9FWI2_ORYSJ 1.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.363e-14
N-terminus
sp_v3.0_unigene53988 SustainPine v3.0 484
• AutoFact: Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH 1.0e-36
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Copia-type polyprotein 1.544e-11
Putative C-terminus
sp_v3.0_unigene54740 SustainPine v3.0 294
• AutoFact: Gag-pol polyprotein, putative n=1 Tax=Solanum demissum RepID=Q6L3Y5_SOLDE 5.0e-27
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Polyprotein 4.162e-12
Internal
sp_v3.0_unigene54821 SustainPine v3.0 430
• AutoFact: Gag-pol polyprotein, putative n=1 Tax=Solanum demissum RepID=Q6L3Y5_SOLDE 2.0e-29
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Copia-type polyprotein 1.849e-07
C-terminus
sp_v3.0_unigene55686 SustainPine v3.0 310
• AutoFact: Unassigned protein
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 2.013e-08
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain