Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Ribosomal protein S1, RNA-binding domain

Term: IPR003029  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene152014 SustainPine v3.0 549
AutoFact: DNAdirected RNA polymerase II 19 kDa polypeptide pu n=2 Tax=Oomycetes RepID=F0WFZ2_9STRA 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: RNA polymerase II subunit B7 1.86e-09
C-terminus
sp_v3.0_unigene153206 SustainPine v3.0 435
AutoFact: Polymerase n=3 Tax=Chromadorea RepID=E1FRC1_LOALO 9.80909e-45
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: RNA polymerase II subunit B7 1.577e-09
N-terminus
sp_v3.0_unigene153975 SustainPine v3.0 379
AutoFact: Bacterial translation initiation factor 1 (BIF-1) n=2 Tax=Bacteroidetes RepID=F2II62_FLUTR 2.0e-28
FL-Next: sp=Translation initiation factor IF-1, chloroplastic; Pinus densiflora (Japanese red pine). Plastid; Chloroplast. 0.0
Sma3: Translation initiation factor IF-1, chloroplastic 0.0
Complete
sp_v3.0_unigene155094 SustainPine v3.0 575
AutoFact: Preprotein translocase subunit secY n=4 Tax=Oxalobacteraceae RepID=A4G9R8_HERAR 0.0
FL-Next: sp=Translation initiation factor IF-1, chloroplastic; Cathaya argyrophylla. Plastid; Chloroplast. 0.0
Complete
sp_v3.0_unigene155566 SustainPine v3.0 306
AutoFact: Translation initiation factor IF-1 n=9 Tax=Actinobacteria (class) RepID=IF1_NOCSJ 6.0e-32
FL-Next: sp=Translation initiation factor IF-1, chloroplastic; Pinus densiflora (Japanese red pine). Plastid; Chloroplast. 0.0
Sma3: Translation initiation factor IF-1, chloroplastic 0.0
Complete
sp_v3.0_unigene156483 SustainPine v3.0 419
AutoFact: putative pre-rRNA processing protein, 5' partial [Arabidopsis thaliana] 4.0e-32
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene156508 SustainPine v3.0 294
AutoFact: DEAD/DEAH box helicase n=1 Tax=Polysphondylium pallidum RepID=D3B6F6_POLPA 9.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative pre-mRNA splicing factor RNA helicase 8.172e-09
Internal
sp_v3.0_unigene156655 SustainPine v3.0 394
AutoFact: Translation initiation factor IF-1 1 n=28 Tax=Actinomycetales RepID=IF11_STRAW 2.0e-23
FL-Next: sp=Translation initiation factor IF-1, chloroplastic; Cephalotaxus wilsoniana. Plastid; Chloroplast. 0.0
Sma3: Translation initiation factor IF-1, chloroplastic 8.492e-21
Putative Complete
sp_v3.0_unigene158232 SustainPine v3.0 187
AutoFact: PREDICTED: similar to MGC82596 protein n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E48192 6.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene159507 SustainPine v3.0 141
AutoFact: putative RNA helicase [Oryza sativa Japonica Group] 3.0e-05
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene159577 SustainPine v3.0 479
AutoFact: helicase associated domain-containing protein [Arabidopsis thaliana] gb|AEE33493.1| helicase associated domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-dependent RNA helicase, putative 1.361e-18
Internal
sp_v3.0_unigene161301 SustainPine v3.0 347
AutoFact: Global transcription factor group n=2 Tax=Populus trichocarpa RepID=B9HDT6_POPTR 7.0e-18
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Internal
sp_v3.0_unigene161400 SustainPine v3.0 381
AutoFact: putative translation initiation factor IF-2 [Arabidopsis thaliana] 2.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative translation initiation factor IF-2 1.679e-14
Putative N-terminus
sp_v3.0_unigene162502 SustainPine v3.0 340
AutoFact: Suppressor of ty, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9SEX9_RICCO 7.0e-23
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Sma3: Global transcription factor group 1.186e-07
Internal
sp_v3.0_unigene162843 SustainPine v3.0 464
AutoFact: pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] 0.0
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-dependent RNA helicase, putative 1.716e-16
Internal
sp_v3.0_unigene162871 SustainPine v3.0 218
AutoFact: putative pre-rRNA processing protein, 5' partial [Arabidopsis thaliana] 3.0e-15
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene162884 SustainPine v3.0 419
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative Receptor-like serine/threonine kinase(RFK1) 5.701e-10
Internal
sp_v3.0_unigene163289 SustainPine v3.0 162
AutoFact: transcription elongation factor SPT6 [Arabidopsis thaliana] gb|AEE34374.1| transcription elongation factor SPT6 [Arabidopsis thaliana] 2.0e-17
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Global transcription factor group 3.314e-10
Internal
sp_v3.0_unigene163408 SustainPine v3.0 407
AutoFact: ATP-dependent RNA helicase (Fragment) n=1 Tax=Cucumis melo subsp. melo RepID=E5GBQ6_CUCME 0.0
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-dependent RNA helicase, putative 1.112e-31
Internal
sp_v3.0_unigene164320 SustainPine v3.0 344
AutoFact: Os08g0323600 protein n=2 Tax=Oryza sativa Japonica Group RepID=Q6Z0E3_ORYSJ 3.0e-18
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain