Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: Ribosomal protein S1, RNA-binding domain

Term: IPR003029  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene47270 SustainPine v3.0 143
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9RMI9_RICCO 7.0e-07
FL-Next: tr=ATP-dependent RNA helicase, putative; Ricinus communis (Castor bean). 0.0
Sma3: ATP-dependent RNA helicase, putative 5.304e-14
Internal
sp_v3.0_unigene49780 SustainPine v3.0 451
AutoFact: Helicase, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C873_ARATH 0.0
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-dependent RNA helicase, putative 7.349e-12
Internal
sp_v3.0_unigene58800 SustainPine v3.0 240
AutoFact: ribonuclease G [Francisella tularensis subsp. holarctica LVS] ref|YP_764259.1| ribonuclease G [Francisella tularensis subsp. holarctica OSU18] ref|ZP_02276037.1| ribonuclease G [Francisella tularensis subsp. holarctica FSC200] ref|YP_001429513.2| ribonucl 2.0e-08
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Putative ribonuclease E 2.032e-09
Internal
sp_v3.0_unigene59043 SustainPine v3.0 298
AutoFact: exosome complex component RRP4 [Arabidopsis thaliana] gb|AAC72108.1| Similar to hypothetical protein SPAC2F7.14c gi|1052797 from Schizosaccharomyces pombe cosmid gb|Z50142 [Arabidopsis thaliana] gb|AAQ65156.1| At1g03360 [Arabidopsis thaliana] dbj|BAD43995 7.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene59195 SustainPine v3.0 255
AutoFact: Polyribonucleotide nucleotidyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SI65_RICCO 1.0e-17
FL-Next: tr=Polyribonucleotide nucleotidyltransferase, putative; Ricinus communis (Castor bean). 0.0
Sma3: Polynucleotide phosphorylase 2.613e-08
Internal
sp_v3.0_unigene59465 SustainPine v3.0 459
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 2.94273e-44
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene60214 SustainPine v3.0 298
AutoFact: elongation factor Ts family protein [Arabidopsis thaliana] emb|CAB43920.1| putative protein [Arabidopsis thaliana] emb|CAB79664.1| putative protein [Arabidopsis thaliana] gb|AAL10483.1| AT4g29060/F19B15_90 [Arabidopsis thaliana] gb|AEE85580.1| elongation 3.0e-16
FL-Next: sp=Elongation factor Ts, chloroplastic; Rhodomonas salina (Cryptomonas salina). Plastid; Chloroplast. 0.0
Sma3: Elongation factor Ts 2.317e-17
Putative N-terminus
sp_v3.0_unigene61627 SustainPine v3.0 227
AutoFact: putative RNA helicase [Oryza sativa Japonica Group] dbj|BAD35820.1| putative RNA helicase [Oryza sativa Japonica Group] 2.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative pre-mRNA splicing factor RNA helicase 4.756e-08
Putative N-terminus
sp_v3.0_unigene61692 SustainPine v3.0 243
AutoFact: RNA helicase - like protein [Arabidopsis thaliana] emb|CAB78848.1| RNA helicase-like protein [Arabidopsis thaliana] 5.0e-30
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-dependent RNA helicase, putative 1.335e-21
Internal
sp_v3.0_unigene61942 SustainPine v3.0 322
AutoFact: putative endoribonuclease E [Oryza sativa Japonica Group] 5.0e-29
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Putative ribonuclease E 2.076e-09
Internal
sp_v3.0_unigene62032 SustainPine v3.0 300
AutoFact: T8F5.22 protein n=4 Tax=Arabidopsis thaliana RepID=O80815_ARATH 2.0e-36
FL-Next: tr=Putative uncharacterized protein OJ1579_G03.7; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Global transcription factor group 4.886e-10
N-terminus
sp_v3.0_unigene62074 SustainPine v3.0 266
AutoFact: Transcription elongation factor SPT6 (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RRH2_PHYPA 3.0e-18
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Internal
sp_v3.0_unigene63508 SustainPine v3.0 180
AutoFact: Elongation factor Ts n=2 Tax=Andropogoneae RepID=C5X4S1_SORBI 2.0e-16
FL-Next: sp=Elongation factor Ts, chloroplastic; Galdieria sulphuraria (Red alga). Plastid; Chloroplast. 0.0
Sma3: Elongation factor Ts 4.608e-14
Internal
sp_v3.0_unigene64396 SustainPine v3.0 128
AutoFact: putative polyribonucleotide nucleotidyltransferase [Oryza sativa Japonica Group] 2.0e-09
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene66538 SustainPine v3.0 216
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene74153 SustainPine v3.0 366
AutoFact: putative leucine rich repeat-type serine/threonine receptor-like kinase [Daucus carota] 2.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative disease resistance protein 4.709e-09
Internal
sp_v3.0_unigene75005 SustainPine v3.0 196
AutoFact: putative pre-mRNA-splicing factor ATP-dependent RNA helicase [Arabidopsis thaliana] sp|O22899.1|DHX15_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase gb|AAB63825.1| putative pre-mRNA splicing factor RNA helicase [Arabidops 1.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP-dependent RNA helicase, putative 1.161e-18
N-terminus
sp_v3.0_unigene75568 SustainPine v3.0 194
AutoFact: putative pre-mRNA-splicing factor ATP-dependent RNA helicase [Arabidopsis thaliana] sp|O22899.1|DHX15_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase gb|AAB63825.1| putative pre-mRNA splicing factor RNA helicase [Arabidops 2.0e-18
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-dependent RNA helicase, putative 2.12e-09
Internal
sp_v3.0_unigene75805 SustainPine v3.0 354
AutoFact: Polynucleotide phosphorylase n=1 Tax=Pisum sativum RepID=O24288_PEA 4.0e-24
FL-Next: tr=Polynucleotide phosphorylase; Pisum sativum (Garden pea). 0.0
Sma3: Polynucleotide phosphorylase 1.122e-08
Internal
sp_v3.0_unigene75827 SustainPine v3.0 209
AutoFact: polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana] emb|CAB43864.1| polynucleotide phosphorylase [Arabidopsis thaliana] emb|CAB43865.1| polynucleotide phosphorylase [Arabidopsis thaliana] emb|CAB87625.1| polynucleotide phosphorylase [Arabidop 1.0e-09
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain