|
Sequence
|
Assembly
|
Length (nt)
|
|
Full-Length
|
|
sp_v3.0_unigene6926
|
SustainPine v3.0
|
1365
|
|
• AutoFact: elongation factor Ts family protein [Arabidopsis thaliana] emb|CAB43920.1| putative protein [Arabidopsis thaliana] emb|CAB79664.1| putative protein [Arabidopsis thaliana] gb|AAL10483.1| AT4g29060/F19B15_90 [Arabidopsis thaliana] gb|AEE85580.1| elongation
|
0.0
|
|
• FL-Next: sp=Elongation factor Ts, chloroplastic; Rhodomonas salina (Cryptomonas salina). Plastid; Chloroplast.
|
0.0
|
|
• Sma3: Elongation factor Ts
|
1.251e-35
|
|
Complete
|
|
sp_v3.0_unigene7109
|
SustainPine v3.0
|
2504
|
|
• AutoFact: putative pre-mRNA-splicing factor ATP-dependent RNA helicase [Arabidopsis thaliana] sp|O22899.1|DHX15_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase gb|AAB63825.1| putative pre-mRNA splicing factor RNA helicase [Arabidops
|
0.0
|
|
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress).
|
0.0
|
|
• Sma3: ATP-dependent RNA helicase, putative
|
2.469e-18
|
|
Complete
|
|
sp_v3.0_unigene7219
|
SustainPine v3.0
|
1416
|
|
• AutoFact: chloroplast polyprotein of elongation factor Ts precursor [Arabidopsis thaliana]
|
0.0
|
|
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).
|
0.0
|
|
• Sma3: Elongation factor Ts
|
4.088e-07
|
|
Putative C-terminus
|
|
sp_v3.0_unigene7374
|
SustainPine v3.0
|
2555
|
|
• AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO
|
0.0
|
|
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).
|
0.0
|
|
• Sma3: ATP-dependent RNA helicase, putative
|
7.311e-24
|
|
Putative Complete
|
|
sp_v3.0_unigene7729
|
SustainPine v3.0
|
2007
|
|
• AutoFact: AMSH-like ubiquitin thiolesterase 1 [Arabidopsis thaliana] sp|Q8VYB5.1|AMSH1_ARATH RecName: Full=AMSH-like ubiquitin thiolesterase 1; AltName: Full=Deubiquitinating enzyme AMSH1 gb|AAL60033.1| unknown protein [Arabidopsis thaliana] gb|AAM20241.1| unknown
|
0.0
|
|
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).
|
0.0
|
|
• Sma3: Amsh, putative
|
1.458e-13
|
|
Complete
|
|
sp_v3.0_unigene8184
|
SustainPine v3.0
|
2156
|
|
• AutoFact: small subunit ribosomal protein S1 [Arabidopsis thaliana] gb|AAF43225.1|AC012654_9 Contains S1 RNA binding domain PF|00575. EST gb|AI997850 comes from this gene [Arabidopsis thaliana] gb|AEE35223.1| small subunit ribosomal protein S1 [Arabidopsis thaliana
|
0.0
|
|
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).
|
0.0
|
|
Complete
|
|
sp_v3.0_unigene9328
|
SustainPine v3.0
|
1868
|
|
• AutoFact: RecName: Full=DNA-directed RNA polymerase II subunit RPB7; Short=RNA polymerase II subunit B7 gb|AAA34005.1| RNA polymerase II [Glycine max] gb|ACU13766.1| unknown [Glycine max]
|
0.0
|
|
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida).
|
0.0
|
|
• Sma3: Putative RNA polymerase II subunit 5
|
0.0
|
|
Complete
|
|
sp_v3.0_unigene9852
|
SustainPine v3.0
|
1607
|
|
• AutoFact: small subunit ribosomal protein S1 [Arabidopsis thaliana] gb|AAF43225.1|AC012654_9 Contains S1 RNA binding domain PF|00575. EST gb|AI997850 comes from this gene [Arabidopsis thaliana] gb|AEE35223.1| small subunit ribosomal protein S1 [Arabidopsis thaliana
|
0.0
|
|
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).
|
0.0
|
|
C-terminus
|
|
sp_v3.0_unigene10230
|
SustainPine v3.0
|
1343
|
|
• AutoFact: exoribonuclease-like [Oryza sativa Japonica Group] gb|EEC74235.1| hypothetical protein OsI_09429 [Oryza sativa Indica Group] gb|EEE58039.1| hypothetical protein OsJ_08863 [Oryza sativa Japonica Group]
|
0.0
|
|
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).
|
0.0
|
|
• Sma3: 3-5 exoribonuclease CSL4
|
8.982e-10
|
|
Complete
|
|
sp_v3.0_unigene10978
|
SustainPine v3.0
|
1298
|
|
• AutoFact: RNAse E/G-like protein n=8 Tax=Arabidopsis RepID=F4IV66_ARATH
|
0.0
|
|
• FL-Next: sp=Ribonuclease E homolog; Porphyra purpurea. Plastid; Chloroplast.
|
0.0
|
|
• Sma3: Putative ribonuclease E
|
2.076e-09
|
|
C-terminus
|
|
sp_v3.0_unigene11006
|
SustainPine v3.0
|
2048
|
|
• AutoFact: exosome complex component RRP4 [Arabidopsis thaliana] gb|AAC72108.1| Similar to hypothetical protein SPAC2F7.14c gi|1052797 from Schizosaccharomyces pombe cosmid gb|Z50142 [Arabidopsis thaliana] gb|AAQ65156.1| At1g03360 [Arabidopsis thaliana] dbj|BAD43995
|
0.0
|
|
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).
|
0.0
|
|
Complete
|
|
sp_v3.0_unigene11761
|
SustainPine v3.0
|
1205
|
|
• AutoFact: ribosomal protein S1-like RNA-binding domain-containing protein [Arabidopsis thaliana] dbj|BAB01847.1| unnamed protein product [Arabidopsis thaliana] gb|AAK83625.1| AT3g23700/MYM9_3 [Arabidopsis thaliana] gb|AAM98102.1| At3g23700/MYM9_3 [Arabidopsis thali
|
0.0
|
|
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).
|
0.0
|
|
C-terminus
|
|
sp_v3.0_unigene12198
|
SustainPine v3.0
|
1158
|
|
• AutoFact: [J] COG1097 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain)
|
7.0e-36
|
|
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape).
|
0.0
|
|
• Sma3: Chromosome chr17 scaffold_12, whole genome shotgun sequence
|
0.0
|
|
Complete
|
|
sp_v3.0_unigene13071
|
SustainPine v3.0
|
1369
|
|
• AutoFact: pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
|
0.0
|
|
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress).
|
0.0
|
|
• Sma3: ATP-dependent RNA helicase, putative
|
1.39e-18
|
|
Internal
|
|
sp_v3.0_unigene13150
|
SustainPine v3.0
|
719
|
|
• AutoFact: [S] COG4886 Leucine-rich repeat (LRR) protein
|
7.0e-26
|
|
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).
|
0.0
|
|
• Sma3: Leucine-rich repeat receptor-like protein kinase
|
3.345e-10
|
|
Internal
|
|
sp_v3.0_unigene13580
|
SustainPine v3.0
|
602
|
|
• AutoFact: Polynucleotide phosphorylase n=1 Tax=Pisum sativum RepID=O24288_PEA
|
0.0
|
|
• FL-Next: tr=Polynucleotide phosphorylase; Pisum sativum (Garden pea).
|
0.0
|
|
• Sma3: Polynucleotide phosphorylase
|
5.675e-12
|
|
Internal
|
|
sp_v3.0_unigene15106
|
SustainPine v3.0
|
606
|
|
• AutoFact: polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana] emb|CAB43864.1| polynucleotide phosphorylase [Arabidopsis thaliana] emb|CAB43865.1| polynucleotide phosphorylase [Arabidopsis thaliana] emb|CAB87625.1| polynucleotide phosphorylase [Arabidop
|
0.0
|
|
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).
|
0.0
|
|
Putative N-terminus
|
|
sp_v3.0_unigene18150
|
SustainPine v3.0
|
1431
|
|
• AutoFact: exosome complex component RRP4 [Arabidopsis thaliana] gb|AAC72108.1| Similar to hypothetical protein SPAC2F7.14c gi|1052797 from Schizosaccharomyces pombe cosmid gb|Z50142 [Arabidopsis thaliana] gb|AAQ65156.1| At1g03360 [Arabidopsis thaliana] dbj|BAD43995
|
0.0
|
|
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).
|
0.0
|
|
Complete
|
|
sp_v3.0_unigene18327
|
SustainPine v3.0
|
612
|
|
• AutoFact: Mpp10 multi-domain protein
|
1.0e-06
|
|
coding
|
|
sp_v3.0_unigene19634
|
SustainPine v3.0
|
425
|
|
• AutoFact: RecName: Full=DNA-directed RNA polymerase II subunit RPB7; Short=RNA polymerase II subunit B7 gb|AAA34005.1| RNA polymerase II [Glycine max] gb|ACU13766.1| unknown [Glycine max]
|
2.0e-07
|
|
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida).
|
0.0
|
|
N-terminus
|
