Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA-binding S4 domain

Term: IPR002942  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene155650 SustainPine v3.0 333
• AutoFact: Ribosomal protein S4, putative n=2 Tax=Plasmodium (Vinckeia) RepID=Q4Z002_PLABA 3.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nucleolar ribonucleoprotein U3 component 6.335e-06
Putative N-terminus
sp_v3.0_unigene155689 SustainPine v3.0 372
• AutoFact: 40S ribosomal protein S4, X isoform, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5LEI2_9ALVE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 3.955e-24
N-terminus
sp_v3.0_unigene155907 SustainPine v3.0 251
• AutoFact: U3 small nucleolar ribonucleoprotein protein IMP3 p n=1 Tax=Albugo laibachii Nc14 RepID=F0W7J4_9STRA 8.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein-like 1.666e-06
Putative C-terminus
sp_v3.0_unigene156011 SustainPine v3.0 287
• AutoFact: 40S ribosomal protein S9 (Fragment) n=1 Tax=Cyanophora paradoxa RepID=Q9SCG0_CYAPA 6.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 4.2039e-45
C-terminus
sp_v3.0_unigene156016 SustainPine v3.0 435
• AutoFact: Probable 40S ribosomal protein S9 n=16 Tax=Trypanosomatidae RepID=RS9_TRYBB 1.99965e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 7.187e-37
C-terminus
sp_v3.0_unigene156019 SustainPine v3.0 125
• AutoFact: RS9, ribosomal protein 9 n=1 Tax=Thalassiosira pseudonana RepID=B8C1H2_THAPS 1.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 1.144e-30
Putative N-terminus
sp_v3.0_unigene156143 SustainPine v3.0 323
• AutoFact: 40S ribosomal protein S9, putative n=2 Tax=Paramecium tetraurelia RepID=Q6BFU7_PARTE 3.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 1.309e-29
N-terminus
sp_v3.0_unigene156487 SustainPine v3.0 204
• AutoFact: 40S ribosomal subunit protein S9, putative n=1 Tax=Babesia bovis RepID=A7ATG1_BABBO 9.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 7.575e-26
Putative N-terminus
sp_v3.0_unigene156512 SustainPine v3.0 320
• AutoFact: 40S ribosomal protein S4 n=1 Tax=Dictyostelium discoideum RepID=RS4_DICDI 3.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 3.336e-24
N-terminus
sp_v3.0_unigene157749 SustainPine v3.0 223
• AutoFact: 40S ribosomal protein S9 n=1 Tax=Chlamydomonas sp. HS-5 RepID=Q9XFU5_9CHLO 4.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 4.799e-26
N-terminus
sp_v3.0_unigene157869 SustainPine v3.0 476
• AutoFact: Ribosomal protein S4 (Fragment) n=1 Tax=Argopecten irradians RepID=Q8ITB7_AEQIR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 4.563e-24
C-terminus
sp_v3.0_unigene158097 SustainPine v3.0 394
• AutoFact: ribosomal protein S4 [Myxine glutinosa] 3.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 2.043e-20
C-terminus
sp_v3.0_unigene158188 SustainPine v3.0 469
• AutoFact: Ribosomal protein S4 n=3 Tax=Polyphaga RepID=D1M809_9CUCU 1.4013e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 3.955e-24
N-terminus
sp_v3.0_unigene158231 SustainPine v3.0 401
• AutoFact: 40S ribosomal protein S9 n=7 Tax=Ajellomyces RepID=C0NLR5_AJECG 3.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 1.54143e-44
Putative C-terminus
sp_v3.0_unigene158249 SustainPine v3.0 364
• AutoFact: 40S ribosomal protein S9 (S7) n=2 Tax=Metarhizium RepID=E9EUL6_METAR 4.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 1.283e-40
C-terminus
sp_v3.0_unigene158411 SustainPine v3.0 518
• AutoFact: 40S ribosomal protein S4 n=4 Tax=Obtectomera RepID=RS4_BOMMO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 3.504e-24
N-terminus
sp_v3.0_unigene158445 SustainPine v3.0 231
• AutoFact: 40S ribosomal protein S9 n=1 Tax=Guillardia theta RepID=Q98S15_GUITH 7.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 2.805e-26
N-terminus
sp_v3.0_unigene158655 SustainPine v3.0 198
• AutoFact: [J] COG1471 Ribosomal protein S4E 4.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 3.336e-24
N-terminus
sp_v3.0_unigene158678 SustainPine v3.0 264
• AutoFact: 40S ribosomal protein S4 n=3 Tax=core eudicotyledons RepID=RS4_SOLTU 2.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 3.955e-24
N-terminus
sp_v3.0_unigene158843 SustainPine v3.0 249
• AutoFact: Ribosomal protein S4, component of cytosolic 80S ribosome and 40S small subunit n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S956_OSTLU 3.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 3.336e-24
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain