Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA-binding S4 domain

Term: IPR002942  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene143648 SustainPine v3.0 252
• AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 4.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 7.05e-17
Internal
sp_v3.0_unigene144141 SustainPine v3.0 404
• AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 3.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 2.75201e-41
Putative C-terminus
sp_v3.0_unigene144244 SustainPine v3.0 632
• AutoFact: 40S ribosomal protein S4-3 [Arabidopsis thaliana] sp|Q8VYK6.2|RS43_ARATH RecName: Full=40S ribosomal protein S4-3 gb|AAL16117.1|AF428285_1 AT5g58420/mqj2_10 [Arabidopsis thaliana] gb|AAM64284.1| ribosomal protein S4-like [Arabidopsis thaliana] gb|AED97051 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 4.052e-24
C-terminus
sp_v3.0_unigene144924 SustainPine v3.0 484
• AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Putative N-terminus
sp_v3.0_unigene145113 SustainPine v3.0 264
• AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 6.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 2.66247e-44
Putative C-terminus
sp_v3.0_unigene150285 SustainPine v3.0 421
• AutoFact: ribosomal protein S9 [Lysiphlebus testaceipes] gb|AAX62466.1| ribosomal protein S9 variant 1 [Lysiphlebus testaceipes] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 2.94273e-44
C-terminus
sp_v3.0_unigene150415 SustainPine v3.0 341
• AutoFact: 40S ribosomal protein S4 n=2 Tax=Euteleostei RepID=C0H7L0_SALSA 2.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 2.131e-20
C-terminus
sp_v3.0_unigene150475 SustainPine v3.0 362
• AutoFact: Ribosomal protein s4a n=1 Tax=Ancylostoma caninum RepID=A4ZVZ6_ANCCA 5.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 1.916e-20
C-terminus
sp_v3.0_unigene150766 SustainPine v3.0 184
• AutoFact: Ribosomal protein S9, component of cytosolic 80S ribosome and 40S small subunit n=3 Tax=Chlamydomonadales RepID=A8JGF8_CHLRE 1.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 5.121e-38
C-terminus
sp_v3.0_unigene150791 SustainPine v3.0 324
• AutoFact: Ribosomal protein S9, component of cytosolic 80S ribosome and 40S small subunit n=3 Tax=Chlamydomonadales RepID=A8JGF8_CHLRE 2.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 1.82169e-44
C-terminus
sp_v3.0_unigene150834 SustainPine v3.0 301
• AutoFact: 40S ribosomal protein S9, putative n=5 Tax=Plasmodium RepID=A5K9F8_PLAVS 4.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 7.00649e-45
Putative C-terminus
sp_v3.0_unigene150872 SustainPine v3.0 297
• AutoFact: 40S ribosomal protein S9, putative n=2 Tax=Sarcocystidae RepID=B9PQU8_TOXGO 3.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 9.80909e-45
Internal
sp_v3.0_unigene151040 SustainPine v3.0 310
• AutoFact: 40S ribosomal protein S9 n=2 Tax=Aspergillus fumigatus RepID=Q4WWT2_ASPFU 8.00001e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 1.12104e-44
Internal
sp_v3.0_unigene151523 SustainPine v3.0 411
• AutoFact: Ribosomal protein S9 n=1 Tax=Pfiesteria piscicida RepID=E8Z6E9_PFIPI 2.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 1.68156e-44
C-terminus
sp_v3.0_unigene151527 SustainPine v3.0 357
• AutoFact: Ribosomal protein S9 n=1 Tax=Pfiesteria piscicida RepID=E8Z6E9_PFIPI 2.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 1.68156e-44
C-terminus
sp_v3.0_unigene151721 SustainPine v3.0 548
• AutoFact: 30S ribosomal protein S4 n=4 Tax=Mycobacterium RepID=RS4_MYCGI 0.0
• FL-Next: sp=30S ribosomal protein S4, chloroplastic; verticillata). Plastid; Chloroplast. 0.0
C-terminus
sp_v3.0_unigene151886 SustainPine v3.0 504
• AutoFact: 40S ribosomal protein S4, putative n=1 Tax=Brugia malayi RepID=A8NNZ4_BRUMA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 2.176e-20
C-terminus
sp_v3.0_unigene151947 SustainPine v3.0 434
• AutoFact: S9 ribosomal protein n=2 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9CJK3_9EUKA 3.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 1.68156e-44
C-terminus
sp_v3.0_unigene152071 SustainPine v3.0 207
• AutoFact: 40S ribosomal protein S9-1 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NCA2_PHYIT 1.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 4.799e-26
Putative N-terminus
sp_v3.0_unigene152152 SustainPine v3.0 211
• AutoFact: 40S ribosomal protein S4 n=1 Tax=Aedes aegypti RepID=Q5QC96_AEDAE 6.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 7.033e-21
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain