Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA-binding S4 domain

Term: IPR002942  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene77282 SustainPine v3.0 256
AutoFact: ribosomal protein S4 [Panax ginseng] 2.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S4 2.834e-17
C-terminus
sp_v3.0_unigene78220 SustainPine v3.0 240
AutoFact: 40S ribosomal protein S4 n=1 Tax=Postia placenta Mad-698-R RepID=B8P7G3_POSPM 1.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S4 1.61e-20
Internal
sp_v3.0_unigene79750 SustainPine v3.0 349
AutoFact: 40S ribosomal protein S4 [Meyerozyma guilliermondii ATCC 6260] gb|EDK38739.1| 40S ribosomal protein S4 [Meyerozyma guilliermondii ATCC 6260] 2.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S4 1.719e-20
C-terminus
sp_v3.0_unigene80028 SustainPine v3.0 352
AutoFact: 40S ribosomal protein S4, putative n=1 Tax=Pediculus humanus corporis RepID=E0W344_PEDHC 4.06377e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S4 4.563e-24
Internal
sp_v3.0_unigene81152 SustainPine v3.0 245
AutoFact: 40S ribosomal protein S9 , putative [Solanum demissum] 4.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S9 2.316e-19
N-terminus
sp_v3.0_unigene81375 SustainPine v3.0 128
AutoFact: 40s ribosomal protein s4, putative [Toxoplasma gondii RH] 2.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S4 3.858e-17
Internal
sp_v3.0_unigene93551 SustainPine v3.0 1099
AutoFact: RNA pseudourine synthase 5 [Arabidopsis thaliana] sp|Q5M721.2|PUS5_ARATH RecName: Full=RNA pseudourine synthase 5; AltName: Full=RNA pseudouridylate synthase 5; AltName: Full=RNA-uridine isomerase 5 gb|AEE78921.1| RNA pseudourine synthase 5 [Arabidopsis t 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: RNA-uridine isomerase 5 1.988e-09
C-terminus
sp_v3.0_unigene94269 SustainPine v3.0 665
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene96711 SustainPine v3.0 1159
AutoFact: Ribosomal protein S4 n=1 Tax=Cycas taitungensis RepID=B0BLG9_CYCTA 0.0
FL-Next: sp=30S ribosomal protein S4, chloroplastic; verticillata). Plastid; Chloroplast. 0.0
Sma3: Ribosomal protein S4 3.55299e-41
Complete
sp_v3.0_unigene96986 SustainPine v3.0 772
AutoFact: tyrS tyrosyl-tRNA synthetase [Arabidopsis thaliana] gb|AAF32473.1| putative tyrosyl-tRNA synthetase [Arabidopsis thaliana] dbj|BAD95182.1| putative tyrosyl-tRNA synthetase [Arabidopsis thaliana] gb|ABK32110.1| At3g02660 [Arabidopsis thaliana] gb|AEE73845. 9.80909e-45
FL-Next: tr=Uncharacterized protein; Zea mays (Maize). 0.0
C-terminus
sp_v3.0_unigene103657 SustainPine v3.0 409
AutoFact: RNA pseudourine synthase 7 [Arabidopsis thaliana] sp|Q9LU60.1|PUS7_ARATH RecName: Full=RNA pseudourine synthase 7; AltName: Full=RNA pseudouridylate synthase 7; AltName: Full=RNA-uridine isomerase 7 dbj|BAA97376.1| unnamed protein product [Arabidopsis tha 2.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene104067 SustainPine v3.0 488
AutoFact: RNA pseudourine synthase 7 [Arabidopsis thaliana] sp|Q9LU60.1|PUS7_ARATH RecName: Full=RNA pseudourine synthase 7; AltName: Full=RNA pseudouridylate synthase 7; AltName: Full=RNA-uridine isomerase 7 dbj|BAA97376.1| unnamed protein product [Arabidopsis tha 1.99993e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: RNA-uridine isomerase 7 1.818e-09
Internal
sp_v3.0_unigene105547 SustainPine v3.0 705
AutoFact: RNA pseudourine synthase 2, chloroplastic n=2 Tax=Oryza sativa RepID=PUS2_ORYSJ 2.8026e-45
FL-Next: sp=RNA pseudourine synthase 2, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: RNA-uridine isomerase 2 3.506e-09
N-terminus
sp_v3.0_unigene107346 SustainPine v3.0 679
AutoFact: 40S ribosomal protein S9 n=2 Tax=Rhizoctonia solani RepID=A5X2M3_THACU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S9 1.82169e-44
Complete
sp_v3.0_unigene124776 SustainPine v3.0 295
AutoFact: tyrS tyrosyl-tRNA synthetase [Arabidopsis thaliana] gb|AAF32473.1| putative tyrosyl-tRNA synthetase [Arabidopsis thaliana] dbj|BAD95182.1| putative tyrosyl-tRNA synthetase [Arabidopsis thaliana] gb|ABK32110.1| At3g02660 [Arabidopsis thaliana] gb|AEE73845. 3.0e-26
FL-Next: tr=Tyrosyl-tRNA synthetase; Coccomyxa subellipsoidea C-169. 0.0
Internal
sp_v3.0_unigene127010 SustainPine v3.0 3660
AutoFact: 40S ribosomal S4 protein [Glycine max] gb|ACU21252.1| unknown [Glycine max] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Putative Complete
sp_v3.0_unigene132914 SustainPine v3.0 514
AutoFact: hemolysin A, putative (ISS) [Ostreococcus tauri] emb|CAL53423.1| hemolysin A, putative (ISS) [Ostreococcus tauri] 2.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Hemolysin A, putative 2.304e-09
Internal
sp_v3.0_unigene136770 SustainPine v3.0 285
AutoFact: tyrS tyrosyl-tRNA synthetase [Arabidopsis thaliana] gb|AAF32473.1| putative tyrosyl-tRNA synthetase [Arabidopsis thaliana] dbj|BAD95182.1| putative tyrosyl-tRNA synthetase [Arabidopsis thaliana] gb|ABK32110.1| At3g02660 [Arabidopsis thaliana] gb|AEE73845. 3.0e-13
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
C-terminus
sp_v3.0_unigene137607 SustainPine v3.0 265
AutoFact: RNA pseudourine synthase 7 [Arabidopsis thaliana] sp|Q9LU60.1|PUS7_ARATH RecName: Full=RNA pseudourine synthase 7; AltName: Full=RNA pseudouridylate synthase 7; AltName: Full=RNA-uridine isomerase 7 dbj|BAA97376.1| unnamed protein product [Arabidopsis tha 4.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: RNA-uridine isomerase 7 9.88e-10
Putative C-terminus
sp_v3.0_unigene141876 SustainPine v3.0 516
AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 5.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S9 2.11302e-41
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain