Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, LSD1-type

Term: IPR005735  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene569 SustainPine v3.0 1610
• AutoFact: vacuolar protein sorting-associated protein 2-1 [Arabidopsis thaliana] ref|XP_002885821.1| SNF7 family protein [Arabidopsis lyrata subsp. lyrata] sp|Q9SKI2.2|VPS2A_ARATH RecName: Full=Vacuolar protein sorting-associated protein 2 homolog 1; Short=AtVPS2-1 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Charged multivesicular body protein 2a, putative 8.715e-13
Complete
sp_v3.0_unigene1675 SustainPine v3.0 3343
• AutoFact: PHD domain containing protein 3.0e-08
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene3366 SustainPine v3.0 1708
• AutoFact: metacaspase 1 [Arabidopsis thaliana] sp|Q7XJE6.1|MCA1_ARATH RecName: Full=Metacaspase-1; Short=AtMC1; Short=AtMCP1b; AltName: Full=Protein LSD ONE LIKE 3 gb|AAP84706.1| metacaspase 1 [Arabidopsis thaliana] gb|AAP44514.1| metacaspase 1 [Arabidopsis thalian 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene7598 SustainPine v3.0 3216
• AutoFact: Probable polygalacturonase non-catalytic subunit JP650 n=3 Tax=Arabidopsis RepID=JP650_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Charged multivesicular body protein 2a, putative 5.721e-12
Putative Complete
sp_v3.0_unigene11814 SustainPine v3.0 1579
• AutoFact: metacaspase 1 [Arabidopsis thaliana] sp|Q7XJE6.1|MCA1_ARATH RecName: Full=Metacaspase-1; Short=AtMC1; Short=AtMCP1b; AltName: Full=Protein LSD ONE LIKE 3 gb|AAP84706.1| metacaspase 1 [Arabidopsis thaliana] gb|AAP44514.1| metacaspase 1 [Arabidopsis thalian 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene15863 SustainPine v3.0 782
• AutoFact: Caspase, putative n=1 Tax=Ricinus communis RepID=B9RA22_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Caspase, putative 1.947e-22
N-terminus
sp_v3.0_unigene18371 SustainPine v3.0 1388
• AutoFact: zinc finger protein LSD1 [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene31338 SustainPine v3.0 659
• AutoFact: vacuolar protein sorting-associated protein 2-1 [Arabidopsis thaliana] ref|XP_002885821.1| SNF7 family protein [Arabidopsis lyrata subsp. lyrata] sp|Q9SKI2.2|VPS2A_ARATH RecName: Full=Vacuolar protein sorting-associated protein 2 homolog 1; Short=AtVPS2-1 1.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Breast adenocarcinoma marker-like 4.107e-09
C-terminus
sp_v3.0_unigene60010 SustainPine v3.0 282
• AutoFact: pfam00656, Peptidase_C14, Caspase domain 6.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ICE-like protease p20 domain containing protein, expressed 2.544e-08
Internal
sp_v3.0_unigene60613 SustainPine v3.0 267
• AutoFact: pfam00656, Peptidase_C14, Caspase domain 3.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ICE-like protease p20 domain containing protein, expressed 1.354e-08
Internal
sp_v3.0_unigene60770 SustainPine v3.0 186
• AutoFact: Charged multivesicular body protein 2b-B, putative n=1 Tax=Ricinus communis RepID=B9SV62_RICCO 1.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene61711 SustainPine v3.0 340
• AutoFact: Putative sno protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7F1V5_ORYSJ 1.0e-15
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
C-terminus
sp_v3.0_unigene61986 SustainPine v3.0 263
• AutoFact: Caspase, putative n=1 Tax=Ricinus communis RepID=B9SKF8_RICCO 2.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Caspase, putative 8.833e-15
Internal
sp_v3.0_unigene64835 SustainPine v3.0 198
• AutoFact: Unassigned protein
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene79034 SustainPine v3.0 196
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene80845 SustainPine v3.0 143
• AutoFact: caspase, putative 9.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Caspase, putative 5.689e-08
Internal
sp_v3.0_unigene101718 SustainPine v3.0 491
• AutoFact: Caspase, putative n=1 Tax=Ricinus communis RepID=B9SKF8_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Caspase, putative 2.446e-22
Internal
sp_v3.0_unigene103778 SustainPine v3.0 575
• AutoFact: Unassigned protein
• FL-Next: tr=Strawberry notch-like protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene126734 SustainPine v3.0 663
• AutoFact: vacuolar protein sorting-associated protein 2-1 [Arabidopsis thaliana] ref|XP_002885821.1| SNF7 family protein [Arabidopsis lyrata subsp. lyrata] sp|Q9SKI2.2|VPS2A_ARATH RecName: Full=Vacuolar protein sorting-associated protein 2 homolog 1; Short=AtVPS2-1 1.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Breast adenocarcinoma marker-like 3.506e-09
C-terminus
sp_v3.0_unigene127060 SustainPine v3.0 417
• AutoFact: metacaspase 1 [Arabidopsis thaliana] sp|Q7XJE6.1|MCA1_ARATH RecName: Full=Metacaspase-1; Short=AtMC1; Short=AtMCP1b; AltName: Full=Protein LSD ONE LIKE 3 gb|AAP84706.1| metacaspase 1 [Arabidopsis thaliana] gb|AAP44514.1| metacaspase 1 [Arabidopsis thalian 2.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Caspase, putative 1.895e-11
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain