Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, CCHC-type

Term: IPR001878  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene186261 SustainPine v3.0 353
• AutoFact: retrotransposable element Tf2 155 kDa protein type 1-like 9.0e-28
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 2.609e-15
Internal
sp_v3.0_unigene186329 SustainPine v3.0 476
• AutoFact: PREDICTED: similar to pol polyprotein, partial n=1 Tax=Nasonia vitripennis RepID=UPI00015B4525 3.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative retroelement pol polyprotein 1.049e-07
N-terminus
sp_v3.0_unigene186477 SustainPine v3.0 644
• AutoFact: DUF659 domain containing protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA binding protein, putative 2.652e-06
Complete
sp_v3.0_unigene186492 SustainPine v3.0 526
• AutoFact: Polyprotein n=1 Tax=Oryza australiensis RepID=Q0ZLH4_9ORYZ 0.0
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Putative C-terminus
sp_v3.0_unigene186521 SustainPine v3.0 403
• AutoFact: cytochrome P450 [Pyrus communis] 6.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cytochrome P450 6.863e-21
N-terminus
sp_v3.0_unigene186780 SustainPine v3.0 624
• AutoFact: Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9SHL9_ARATH 2.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene186851 SustainPine v3.0 437
• AutoFact: Gag-pol polyprotein, putative n=1 Tax=Solanum demissum RepID=Q6L3Y5_SOLDE 3.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene186908 SustainPine v3.0 466
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q7XEK0_ORYSJ 2.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 9.7e-21
Putative Complete
sp_v3.0_unigene187046 SustainPine v3.0 393
• AutoFact: RVT_2 domain containing protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 3.24e-08
Internal
sp_v3.0_unigene187072 SustainPine v3.0 448
• AutoFact: Copia-type polyprotein n=1 Tax=Cucumis melo subsp. melo RepID=E5GCE4_CUCME 1.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene187117 SustainPine v3.0 223
• AutoFact: Unassigned protein 8.0e-18
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene187189 SustainPine v3.0 581
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q6I5H9_ORYSJ 8.0e-30
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Gag-pol polyprotein, putative 2.307e-06
Internal
sp_v3.0_unigene187222 SustainPine v3.0 507
• AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold n=1 Tax=Medicago truncatula RepID=A2Q2C7_MEDTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 2.47105e-41
Putative Complete
sp_v3.0_unigene187261 SustainPine v3.0 594
• AutoFact: Unassigned protein
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Copia-type polyprotein 5.182e-11
C-terminus
sp_v3.0_unigene187275 SustainPine v3.0 443
• AutoFact: rve domain containing protein 9.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene187297 SustainPine v3.0 429
• AutoFact: Putative copia-type polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q9FWI2_ORYSJ 1.99993e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 0.0
N-terminus
sp_v3.0_unigene187338 SustainPine v3.0 451
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2QQP3_ORYSJ 4.0e-37
• FL-Next: tr=OSIGBa0139I12.6 protein; Oryza sativa (Rice). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 2.24208e-44
Internal
sp_v3.0_unigene187343 SustainPine v3.0 476
• AutoFact: Unassigned protein 5.0e-27
• FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Internal
sp_v3.0_unigene187353 SustainPine v3.0 274
• AutoFact: Unassigned protein
• FL-Next: tr=RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 9.658e-23
Internal
sp_v3.0_unigene187386 SustainPine v3.0 332
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QLK1_ORYSJ 2.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Copia-type polyprotein 1.126e-07
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain