Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, CCHC-type

Term: IPR001878  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene164454 SustainPine v3.0 335
• AutoFact: Reverse transcriptase (Fragment) n=2 Tax=Beta procumbens RepID=Q8L4Q2_BETPR 2.0e-28
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.8026e-45
Internal
sp_v3.0_unigene164458 SustainPine v3.0 312
• AutoFact: rve domain containing protein 8.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.261e-40
Putative Complete
sp_v3.0_unigene164475 SustainPine v3.0 175
• AutoFact: Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH 1.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 5.79e-10
Internal
sp_v3.0_unigene164489 SustainPine v3.0 470
• AutoFact: Putative gag-pol polyprotein, identical n=1 Tax=Solanum demissum RepID=Q6L3N8_SOLDE 7.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 6.738e-27
Internal
sp_v3.0_unigene164501 SustainPine v3.0 250
• AutoFact: Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Nicotiana tabacum RepID=POLX_TOBAC 2.0e-14
• FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
N-terminus
sp_v3.0_unigene164512 SustainPine v3.0 347
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q5KQB0_ORYSJ 8.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: cDNA clone:001-115-E07, full insert sequence 7.797e-06
N-terminus
sp_v3.0_unigene164515 SustainPine v3.0 235
• AutoFact: Integrase n=1 Tax=Cucumis melo subsp. melo RepID=A6YTD9_CUCME 2.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Copia-type polyprotein 7.829e-08
Internal
sp_v3.0_unigene164525 SustainPine v3.0 280
• AutoFact: Os10g0317000 protein n=2 Tax=Oryza sativa RepID=Q7XFZ5_ORYSJ 6.0e-28
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, unclassified 2.823e-12
Putative N-terminus
sp_v3.0_unigene164541 SustainPine v3.0 355
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene164546 SustainPine v3.0 225
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus coulteri RepID=Q06298_PINCU 3.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Reverse transcriptase 1.651e-15
Internal
sp_v3.0_unigene164548 SustainPine v3.0 218
• AutoFact: Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9SQW9_ARATH 7.0e-19
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 1.892e-18
Putative C-terminus
sp_v3.0_unigene164577 SustainPine v3.0 280
• AutoFact: Gag-Pol n=1 Tax=Ipomoea batatas RepID=Q6BCY1_IPOBA 6.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 3.918e-17
Internal
sp_v3.0_unigene164583 SustainPine v3.0 347
• AutoFact: Gag-Pol n=1 Tax=Ipomoea batatas RepID=Q6BCY1_IPOBA 2.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Gag-Pol polyprotein 1.229e-07
Internal
sp_v3.0_unigene164586 SustainPine v3.0 175
• AutoFact: Copia-type reverse transcriptase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9M197_ARATH 3.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene164592 SustainPine v3.0 142
• AutoFact: Polyprotein, putative n=1 Tax=Solanum demissum RepID=Q6L3X6_SOLDE 1.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene164601 SustainPine v3.0 422
• AutoFact: Unassigned protein
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.087e-17
Putative C-terminus
sp_v3.0_unigene164613 SustainPine v3.0 401
• AutoFact: Putative transposase n=1 Tax=Arabidopsis thaliana RepID=O81190_ARATH 5.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene164685 SustainPine v3.0 179
• AutoFact: F20P5.25 protein n=1 Tax=Arabidopsis thaliana RepID=O04543_ARATH 4.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene164717 SustainPine v3.0 391
• AutoFact: T26F17.17 n=1 Tax=Arabidopsis thaliana RepID=Q9SFE1_ARATH 3.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Copia-type polyprotein 1.328e-10
Internal
sp_v3.0_unigene164730 SustainPine v3.0 178
• AutoFact: Reverse transcriptase (Fragment) n=2 Tax=Sciadopitys verticillata RepID=Q56GF7_SCIVE 3.0e-20
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain