Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Like-Sm ribonucleoprotein (LSM) domain

Term: IPR001163  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene191743 SustainPine v3.0 585
AutoFact: small nuclear ribonucleoprotein homolog [Arabidopsis thaliana] 2.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Predicted protein 0.0
Complete
sp_v3.0_unigene192121 SustainPine v3.0 458
AutoFact: PREDICTED: similar to GL19160 isoform 1 n=2 Tax=Ciona intestinalis RepID=UPI00006A5B0C 6.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 4.31e-13
Putative Complete
sp_v3.0_unigene192637 SustainPine v3.0 458
AutoFact: Small nuclear ribonucleoprotein Sm D2 n=48 Tax=Coelomata RepID=SMD2_HUMAN 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Predicted protein 0.0
Complete
sp_v3.0_unigene193530 SustainPine v3.0 407
AutoFact: PREDICTED: similar to snRNP core protein SMX5d [Ornithorhynchus anatinus] 4.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SnRNP core Sm protein Sm-X5-like protein 2.783e-09
Putative Complete
sp_v3.0_unigene198712 SustainPine v3.0 498
AutoFact: LSM domain containing protein 7.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene201549 SustainPine v3.0 256
AutoFact: thiamin pyrophosphokinase1 [Arabidopsis thaliana] gb|AAL25560.1| At1g02880/F22D16_33 [Arabidopsis thaliana] gb|AAM26660.1| At1g02880/F22D16_33 [Arabidopsis thaliana] gb|AEE27488.1| thiamin pyrophosphokinase1 [Arabidopsis thaliana] 5.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative thiamin pyrophosphokinase 7.939e-13
C-terminus
sp_v3.0_unigene201655 SustainPine v3.0 660
AutoFact: LSM domain-containing protein n=1 Tax=Glomerella graminicola M1.001 RepID=E3Q2L4_COLGM 9.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene202049 SustainPine v3.0 1066
AutoFact: small nuclear ribonucleoprotein, putative [Arabidopsis thaliana] 3.9937e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene204770 SustainPine v3.0 463
AutoFact: Predicted protein n=2 Tax=Physcomitrella patens subsp. patens RepID=A9S411_PHYPA 7.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Predicted protein 0.0
Putative Complete
sp_v3.0_unigene205017 SustainPine v3.0 317
AutoFact: PREDICTED: similar to small nuclear ribonucleoprotein E n=1 Tax=Ciona intestinalis RepID=UPI000180B612 2.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein E 3.573e-12
Putative Complete
sp_v3.0_unigene206002 SustainPine v3.0 483
AutoFact: small nuclear ribonucleoprotein, putative [Arabidopsis thaliana] 6.99949e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene206053 SustainPine v3.0 441
AutoFact: PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like isoform 1 [Apis mellifera] 3.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein sm d2, putative 4.755e-09
Complete
sp_v3.0_unigene207408 SustainPine v3.0 316
AutoFact: putative Sm protein F [Oryza sativa Japonica Group] dbj|BAG86709.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEE57059.1| hypothetical protein OsJ_06869 [Oryza sativa Japonica Group] 6.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Putative Complete
sp_v3.0_unigene208391 SustainPine v3.0 417
AutoFact: small nuclear ribonucleoprotein D1 [Arabidopsis thaliana] ref|NP_001189837.1| small nuclear ribonucleoprotein D1 [Arabidopsis thaliana] gb|AAF13077.1|AC009176_4 putative small nuclear ribonucleoprotein (Sm-D1) [Arabidopsis thaliana] gb|AAL47458.1| AT3g075 2.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene208529 SustainPine v3.0 931
AutoFact: small nuclear ribonucleoprotein, putative [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain