Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Like-Sm ribonucleoprotein (LSM) domain

Term: IPR001163  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene151867 SustainPine v3.0 427
AutoFact: Small nuclear ribonucleoprotein G n=1 Tax=Phytophthora infestans T30-4 RepID=D0NS89_PHYIT 2.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein polypeptide G 4.921e-13
Complete
sp_v3.0_unigene152348 SustainPine v3.0 418
AutoFact: PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Ciona intestinalis RepID=UPI000180CBAF 9.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Sm-like protein 0.0
Complete
sp_v3.0_unigene152460 SustainPine v3.0 357
AutoFact: small nuclear ribonucleoprotein homolog [Arabidopsis thaliana] 5.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Predicted protein 0.0
Complete
sp_v3.0_unigene152623 SustainPine v3.0 413
AutoFact: Small nuclear ribonucleoprotein Sm D1 putative n=2 Tax=Oomycetes RepID=F0WMY5_9STRA 2.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear riboprotein Sm-D1 2.399e-09
Putative Complete
sp_v3.0_unigene152651 SustainPine v3.0 554
AutoFact: Small nuclear ribonucleoprotein SmD1, putative n=19 Tax=Eurotiomycetidae RepID=Q4WHK1_ASPFU 1.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein Sm D1 3.707e-12
Complete
sp_v3.0_unigene152660 SustainPine v3.0 456
AutoFact: [K] COG1958 Small nuclear ribonucleoprotein (snRNP) homolog 3.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein f, putative 6.913e-09
C-terminus
sp_v3.0_unigene153734 SustainPine v3.0 388
AutoFact: small nuclear ribonucleoprotein F [Arabidopsis thaliana] ref|XP_002867361.1| hypothetical protein ARALYDRAFT_913456 [Arabidopsis lyrata subsp. lyrata] ref|XP_002885912.1| hypothetical protein ARALYDRAFT_899645 [Arabidopsis lyrata subsp. lyrata] sp|Q9SUM2. 1.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein f, putative 6.913e-09
Putative Complete
sp_v3.0_unigene154154 SustainPine v3.0 441
AutoFact: PREDICTED: small nuclear ribonucleoprotein polypeptide E-like n=1 Tax=Saccoglossus kowalevskii RepID=UPI0001CBADDF 2.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein E 3.573e-12
Complete
sp_v3.0_unigene154318 SustainPine v3.0 511
AutoFact: U6 small nuclear ribonucleoprotein (Lsm3), putative n=2 Tax=Trichocomaceae RepID=B6Q9N7_PENMQ 1.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene154600 SustainPine v3.0 278
AutoFact: PREDICTED: similar to LSM4 homolog, U6 small nuclear RNA associated [Tribolium castaneum] 6.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 4.227e-13
Internal
sp_v3.0_unigene154692 SustainPine v3.0 282
AutoFact: Small nuclear ribonucleoprotein SmB, putative n=2 Tax=Trichocomaceae RepID=B8MK81_TALSN 1.0e-19
FL-Next: tr=Putative uncharacterized protein; Chlorella variabilis (Green alga). 0.0
N-terminus
sp_v3.0_unigene155075 SustainPine v3.0 416
AutoFact: Small nuclear ribonucleoprotein D2-like protein n=6 Tax=Coelomata RepID=Q8MUE3_9BIVA 6.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein sm d2, putative 4.755e-09
Putative Complete
sp_v3.0_unigene155464 SustainPine v3.0 223
AutoFact: MGC80249 protein n=1 Tax=Xenopus laevis RepID=Q6GQ93_XENLA 9.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein E 2.419e-12
N-terminus
sp_v3.0_unigene155469 SustainPine v3.0 524
AutoFact: Small nuclear ribonucleoprotein Sm D2 n=3 Tax=Sordariomycetes RepID=E9FA82_METAR 9.99995e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein sm d2, putative 4.755e-09
Putative Complete
sp_v3.0_unigene156043 SustainPine v3.0 391
AutoFact: PREDICTED: similar to Sm D2, partial [Ornithorhynchus anatinus] 1.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Predicted protein 0.0
Complete
sp_v3.0_unigene156432 SustainPine v3.0 365
AutoFact: U6 snRNA-associated Sm-like protein LSm7 [Aspergillus niger CBS 513.88] emb|CAK44131.1| unnamed protein product [Aspergillus niger] 2.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene157917 SustainPine v3.0 281
AutoFact: AAA-type ATPase family protein [Arabidopsis thaliana] dbj|BAF01763.1| hypothetical protein [Arabidopsis thaliana] gb|AEE82177.1| AAA-type ATPase family protein [Arabidopsis thaliana] 2.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AAA-type ATPase family protein, putative, expressed 6.735e-08
Internal
sp_v3.0_unigene158178 SustainPine v3.0 389
AutoFact: U6 snRNA-associated Sm-like protein LSm2 n=33 Tax=Coelomata RepID=LSM2_HUMAN 1.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SnRNP core Sm protein Sm-X5-like protein 2.695e-09
Complete
sp_v3.0_unigene158277 SustainPine v3.0 336
AutoFact: PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm6 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2F60 1.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene158722 SustainPine v3.0 416
AutoFact: AAA-type ATPase family protein [Arabidopsis thaliana] gb|AEE84971.1| AAA-type ATPase family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Microtubule-severing protein katanin 60kDa subunit 4.813e-07
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain