Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Ribosomal protein S5 domain 2-type fold, subgroup

Term: IPR014721  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene165174 SustainPine v3.0 197
• AutoFact: DNA topoisomerase 2 (Fragment) n=1 Tax=Vitis vinifera RepID=D7T341_VITVI 1.0e-23
• FL-Next: sp=DNA topoisomerase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA topoisomerase 2 0.0
Internal
sp_v3.0_unigene165386 SustainPine v3.0 514
• AutoFact: 40S ribosomal protein S9, mitochondrial n=2 Tax=Pyrenophora RepID=B2WJP7_PYRTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene165602 SustainPine v3.0 176
• AutoFact: DNA mismatch repair protein PMS2 [Arabidopsis thaliana] gb|AAL01156.1| DNA mismatch repair protein [Arabidopsis thaliana] gb|AEE82175.1| DNA mismatch repair protein PMS2 [Arabidopsis thaliana] 3.0e-18
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Putative N-terminus
sp_v3.0_unigene166042 SustainPine v3.0 351
• AutoFact: PREDICTED: similar to LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Gallus gallus] 3.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 4.145e-13
N-terminus
sp_v3.0_unigene166387 SustainPine v3.0 451
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QZU8_ORYSJ 3.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Polyprotein, putative 1.953e-06
N-terminus
sp_v3.0_unigene166955 SustainPine v3.0 497
• AutoFact: pfam01423, LSM, LSM domain 3.0e-13
• FL-Next: tr=Glycine rich protein-like; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 4.145e-13
Complete
sp_v3.0_unigene168175 SustainPine v3.0 274
• AutoFact: DNA topoisomerase 2 (Fragment) n=1 Tax=Vitis vinifera RepID=D7T341_VITVI 1.0e-33
• FL-Next: sp=DNA topoisomerase 2; Pisum sativum (Garden pea). 0.0
• Sma3: DNA topoisomerase 2 5.04047e-42
Internal
sp_v3.0_unigene168348 SustainPine v3.0 205
• AutoFact: DNA topoisomerase 2 n=2 Tax=Oryza sativa Japonica Group RepID=Q6Z8D9_ORYSJ 5.0e-29
• FL-Next: sp=DNA topoisomerase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA topoisomerase 2 0.0
Internal
sp_v3.0_unigene174714 SustainPine v3.0 212
• AutoFact: 40S ribosomal protein S2 [Trypanosoma brucei TREU927] ref|XP_827949.1| 40S ribosomal protein S2 [Trypanosoma brucei TREU927] gb|EAN78827.1| 40S ribosomal protein S2, putative [Trypanosoma brucei] gb|EAN78837.1| 40S ribosomal protein S2, putative [Trypanos 0.0001
coding
sp_v3.0_unigene174970 SustainPine v3.0 228
• AutoFact: TT_ORF1 multi-domain protein 5.0e-09
• Sma3: 40S ribosomal protein S2 1.197e-07
coding
sp_v3.0_unigene183153 SustainPine v3.0 562
• AutoFact: Elongation factor 2 n=32 Tax=Magnoliophyta RepID=EF2_BETVU 1.00053e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 2 1.66755e-43
C-terminus
sp_v3.0_unigene183418 SustainPine v3.0 711
• AutoFact: Elongation factor putative n=1 Tax=Albugo laibachii Nc14 RepID=F0WVE7_9STRA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 2 7.91734e-43
C-terminus
sp_v3.0_unigene183563 SustainPine v3.0 816
• AutoFact: DNA topoisomerase 2 n=2 Tax=Malus x domestica RepID=Q2L363_MALDO 3.0e-08
• FL-Next: sp=DNA topoisomerase 2; Pisum sativum (Garden pea). 0.0
• Sma3: DNA topoisomerase 2 5.327e-32
Internal
sp_v3.0_unigene183832 SustainPine v3.0 581
• AutoFact: Unassigned protein 4.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene188116 SustainPine v3.0 536
• AutoFact: L-arabinokinase n=2 Tax=Arabidopsis RepID=ARAK_ARATH 0.0
• FL-Next: sp=L-arabinokinase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative N-terminus
sp_v3.0_unigene188451 SustainPine v3.0 460
• AutoFact: ribosomal protein S9 containing protein n=1 Tax=Tetrahymena thermophila RepID=UPI000150A8D1 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S16 1.955e-36
Putative Complete
sp_v3.0_unigene188452 SustainPine v3.0 315
• AutoFact: Ribosomal protein S16 n=4 Tax=Polyphaga RepID=D1M7Z9_9CUCU 3.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S16 9.359e-33
C-terminus
sp_v3.0_unigene188493 SustainPine v3.0 341
• AutoFact: Eukaryotic translation elongation factor 2 (Fragment) n=1 Tax=Scophthalmus maximus RepID=A0F002_PSEMX 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 2 8.632e-43
Internal
sp_v3.0_unigene188549 SustainPine v3.0 788
• AutoFact: Elongation factor, putative n=2 Tax=Arachnida RepID=B7QMV1_IXOSC 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 2 7.93135e-43
C-terminus
sp_v3.0_unigene188853 SustainPine v3.0 497
• AutoFact: 40S ribosomal protein S16 n=2 Tax=Trichinella spiralis RepID=E5SPV7_TRISP 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain