Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Ribosomal protein S5 domain 2-type fold, subgroup

Term: IPR014721  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene154600 SustainPine v3.0 278
• AutoFact: PREDICTED: similar to LSM4 homolog, U6 small nuclear RNA associated [Tribolium castaneum] 6.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 4.227e-13
Internal
sp_v3.0_unigene154605 SustainPine v3.0 310
• AutoFact: ribosomal protein S2 [Coprinopsis cinerea okayama7#130] gb|EAU91621.1| ribosomal protein S2 [Coprinopsis cinerea okayama7#130] 8.99999e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S2 1.709e-19
Internal
sp_v3.0_unigene154696 SustainPine v3.0 386
• AutoFact: PREDICTED: similar to putatative 28 kDa protein [Ornithorhynchus anatinus] 1.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene154881 SustainPine v3.0 289
• AutoFact: Whole genome shotgun assembly, allelic scaffold set, scaffold scaffoldA_1213 n=2 Tax=Oikopleura dioica RepID=E4WSB1_OIKDI 1.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S2 3.365e-15
Putative N-terminus
sp_v3.0_unigene154947 SustainPine v3.0 476
• AutoFact: Snu114, GTPase of the U5 snRNP particle n=1 Tax=Ectocarpus siliculosus RepID=D8LIZ9_ECTSI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 2 7.998e-10
C-terminus
sp_v3.0_unigene155261 SustainPine v3.0 404
• AutoFact: 40S ribosomal protein S2 n=1 Tax=Caligus rogercresseyi RepID=C1BQ87_9MAXI 1.99965e-42
• FL-Next: tr=40S ribosomal protein S2; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: 40S ribosomal protein S2 1.855e-19
C-terminus
sp_v3.0_unigene155369 SustainPine v3.0 249
• AutoFact: Translation elongation factor G n=1 Tax=Streptomyces sp. C RepID=D9VTN4_9ACTO 5.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene155765 SustainPine v3.0 128
• AutoFact: Protein component of the small (40S) subunit n=1 Tax=Pichia angusta DL-1 RepID=E7R3I0_PICAD 3.0e-12
• FL-Next: tr=40S ribosomal protein S2; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: 40S ribosomal protein S2 3.166e-15
Internal
sp_v3.0_unigene155868 SustainPine v3.0 357
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene156117 SustainPine v3.0 290
• AutoFact: Elongation factor G, domain IV family protein n=3 Tax=Tetrahymena RepID=Q22DR0_TETTH 3.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Elongation factor 2 4.17587e-43
Internal
sp_v3.0_unigene156147 SustainPine v3.0 431
• AutoFact: Ribosomal protein S16 (Fragment) n=1 Tax=Latrodectus hesperus RepID=E7D134_9ARAC 8.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S16 2.205e-36
N-terminus
sp_v3.0_unigene156400 SustainPine v3.0 446
• AutoFact: Pre-rRNA-processing protein PNO1 n=1 Tax=Phaeosphaeria nodorum SN15 RepID=PNO1_PHANO 3.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene156848 SustainPine v3.0 390
• AutoFact: [R] COG1094 Predicted RNA-binding protein (contains KH domains) 2.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Partner of Nob1 8.122e-09
N-terminus
sp_v3.0_unigene156890 SustainPine v3.0 419
• AutoFact: Elongation factor 2 n=25 Tax=Saccharomycetaceae RepID=EF2_ASHGO 0.0
• FL-Next: sp=Elongation factor 2; Beta vulgaris (Sugar beet). 0.0
• Sma3: Elongation factor 2 0.0
Internal
sp_v3.0_unigene157215 SustainPine v3.0 273
• AutoFact: Ribosomal protein S2 n=9 Tax=Euteleostomi RepID=Q6NWC3_DANRE 1.0e-32
• FL-Next: tr=40S ribosomal protein S2; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: 40S ribosomal protein S2 2.066e-19
Internal
sp_v3.0_unigene157264 SustainPine v3.0 338
• AutoFact: 30S ribosomal protein S9 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NKZ4_PHYIT 3.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene157474 SustainPine v3.0 416
• AutoFact: EFGM_ARATH Probable elongation factor G, mitochondrial precursor (ISS) [Ostreococcus tauri] emb|CAL54657.1| EFGM_ARATH Probable elongation factor G, mitochondrial precursor (ISS) [Ostreococcus tauri] 4.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: mEF-G 6.505e-09
C-terminus
sp_v3.0_unigene157554 SustainPine v3.0 344
• AutoFact: Elongation factor G n=2 Tax=Pedobacter RepID=C6Y0Q8_PEDHD 9.94922e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene157708 SustainPine v3.0 371
• AutoFact: RNA-binding protein PNO1-like protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0MTT7_PHYIT 9.80909e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Partner of Nob1 1.355e-08
C-terminus
sp_v3.0_unigene157917 SustainPine v3.0 281
• AutoFact: AAA-type ATPase family protein [Arabidopsis thaliana] dbj|BAF01763.1| hypothetical protein [Arabidopsis thaliana] gb|AEE82177.1| AAA-type ATPase family protein [Arabidopsis thaliana] 2.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: AAA-type ATPase family protein, putative, expressed 6.735e-08
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain