Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: Double-stranded RNA-binding-like

Term: IPR014720  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene103456 SustainPine v3.0 331
• AutoFact: Unassigned protein
• FL-Next: sp=RNA polymerase II C-terminal domain phosphatase-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: C-terminal domain phosphatase-like protein 5.379e-09
Internal
sp_v3.0_unigene105016 SustainPine v3.0 507
• AutoFact: Ribonuclease III, putative n=1 Tax=Ricinus communis RepID=B9SC13_RICCO 6.0e-31
• FL-Next: Isoform 2 of Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 0.0
• Sma3: Dicer-like 4 1.165e-08
N-terminus
sp_v3.0_unigene106370 SustainPine v3.0 383
• AutoFact: C-terminal domain phosphatase-like protein n=3 Tax=Oryza sativa RepID=Q5N890_ORYSJ 4.99997e-41
• FL-Next: sp=RNA polymerase II C-terminal domain phosphatase-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: C-terminal domain phosphatase-like protein 5.669e-09
Internal
sp_v3.0_unigene106415 SustainPine v3.0 495
• AutoFact: Unassigned protein
• FL-Next: sp=RNA polymerase II C-terminal domain phosphatase-like 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: C-terminal domain phosphatase-like protein 1.696e-09
Putative N-terminus
sp_v3.0_unigene107908 SustainPine v3.0 588
• AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9HHX6_POPTR 4.00001e-40
• FL-Next: sp=Endoribonuclease Dicer homolog 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Dicer-like protein 3.417e-20
N-terminus
sp_v3.0_unigene108001 SustainPine v3.0 657
• AutoFact: ribosomal protein S2 [Coprinopsis cinerea okayama7#130] gb|EAU91621.1| ribosomal protein S2 [Coprinopsis cinerea okayama7#130] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S2 1.932e-19
Internal
sp_v3.0_unigene108514 SustainPine v3.0 427
• AutoFact: Putative ATP-dependent RNA helicase n=1 Tax=Oryza sativa RepID=Q9FW67_ORYSA 0.0
• FL-Next: sp=Putative uncharacterized protein At4g01020, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 2.923e-18
Internal
sp_v3.0_unigene108820 SustainPine v3.0 486
• AutoFact: Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease III, bacterial [Medicago truncatula] 0.0
• FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene109039 SustainPine v3.0 483
• AutoFact: Double-stranded RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RZ63_RICCO 0.0
• FL-Next: sp=RNA polymerase II C-terminal domain phosphatase-like 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: C-terminal domain phosphatase-like protein 5.669e-09
Internal
sp_v3.0_unigene109883 SustainPine v3.0 226
• AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9S355_RICCO 3.0e-27
• FL-Next: tr=ATP-dependent RNA helicase, putative; Ricinus communis (Castor bean). 0.0
• Sma3: ATP-dependent RNA helicase, putative 1.044e-11
Internal
sp_v3.0_unigene109933 SustainPine v3.0 449
• AutoFact: dicer-like protein 4 [Arabidopsis thaliana] sp|P84634.2|DCL4_ARATH RecName: Full=Dicer-like protein 4 gb|AAZ80387.1| dicer-like 4 [Arabidopsis thaliana] gb|AED92830.1| dicer-like protein 4 [Arabidopsis thaliana] 1.0e-23
• FL-Next: sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Dicer-like protein 3.366e-07
Internal
sp_v3.0_unigene112812 SustainPine v3.0 426
• AutoFact: putative ATP-dependent RNA helicase [Oryza sativa Japonica Group] 6.0e-07
• FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
• Sma3: ATP-dependent RNA helicase, putative 9.306e-07
Internal
sp_v3.0_unigene114924 SustainPine v3.0 373
• AutoFact: RecName: Full=Endoribonuclease Dicer homolog 1; AltName: Full=Dicer-like protein 1; Short=OsDCL1 gb|AAM52322.1|AC105363_11 Putative CAF protein [Oryza sativa Japonica Group] gb|ABF93701.1| DEAD/DEAH box helicase carpel factory, putative, expressed [Oryza 0.0
• FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: DsRNA-specific nuclease dicer and related ribonuclease 5.009e-08
Internal
sp_v3.0_unigene114946 SustainPine v3.0 300
• AutoFact: CAF protein [Arabidopsis thaliana] 2.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene118062 SustainPine v3.0 122
• AutoFact: Double-stranded RNA-binding (DsRBD) domain-containing protein n=1 Tax=Musa acuminata RepID=Q1EPG5_MUSAC 2.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Double-stranded RNA binding protein 9.26e-13
N-terminus
sp_v3.0_unigene119246 SustainPine v3.0 114
• AutoFact: protein dicer-like 2 [Arabidopsis thaliana] ref|NP_001189798.1| protein dicer-like 2 [Arabidopsis thaliana] sp|Q3EBC8.2|DCL2_ARATH RecName: Full=Endoribonuclease Dicer homolog 2; AltName: Full=Dicer-like protein 2; Short=AtDCL2 gb|AEE73924.1| protein dice 5.0e-08
• FL-Next: Isoform 2 of Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana GN=At3g03300 0.0
• Sma3: Dicer-like protein 1.312e-13
Internal
sp_v3.0_unigene122547 SustainPine v3.0 351
• AutoFact: Ribonuclease III, putative n=1 Tax=Ricinus communis RepID=B9RQZ1_RICCO 3.0e-34
• FL-Next: sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Dicer-like protein 7.796e-10
Internal
sp_v3.0_unigene123087 SustainPine v3.0 328
• AutoFact: Beta-D-glucan exohydrolase n=1 Tax=Nicotiana tabacum RepID=O82151_TOBAC 5.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Beta-D-glucosidase 6.117e-08
N-terminus
sp_v3.0_unigene124835 SustainPine v3.0 151
• AutoFact: Double-stranded RNA-binding domain (DsRBD)-containing protein-like n=2 Tax=Oryza sativa RepID=Q6H5U8_ORYSJ 6.0e-14
• FL-Next: sp=RNA polymerase II C-terminal domain phosphatase-like 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: C-terminal domain phosphatase-like protein 5.308e-09
Internal
sp_v3.0_unigene125218 SustainPine v3.0 274
• AutoFact: DEA(D/H)-box RNA helicase family protein n=4 Tax=Arabidopsis RepID=F4HYJ6_ARATH 3.0e-36
• FL-Next: tr=Uncharacterized protein; Zea mays (Maize). 0.0
• Sma3: ATP-dependent RNA helicase, putative 6.332e-09
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain