Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Double-stranded RNA-binding-like

Term: IPR014720  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene159245 SustainPine v3.0 288
AutoFact: Fructose-bisphosphate aldolase n=1 Tax=Cyanidium caldarium RepID=Q9M634_CYACA 4.0e-24
FL-Next: sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Fructose-bisphosphate aldolase 0.0
C-terminus
sp_v3.0_unigene159577 SustainPine v3.0 479
AutoFact: helicase associated domain-containing protein [Arabidopsis thaliana] gb|AEE33493.1| helicase associated domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-dependent RNA helicase, putative 1.361e-18
Internal
sp_v3.0_unigene160173 SustainPine v3.0 428
AutoFact: helicase associated domain-containing protein [Arabidopsis thaliana] gb|AEE33493.1| helicase associated domain-containing protein [Arabidopsis thaliana] 2.0e-36
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: MRNA splicing factor ATP-dependent RNA helicase (ISS) 2.525e-11
Internal
sp_v3.0_unigene160180 SustainPine v3.0 374
AutoFact: Exo-beta-glucanase n=1 Tax=Lilium longiflorum RepID=Q6UY81_LILLO 1.00053e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Beta-D-glucan exohydrolase-like protein 4.24e-21
C-terminus
sp_v3.0_unigene161070 SustainPine v3.0 389
AutoFact: putative helicase [Oryza sativa Japonica Group] 1.96182e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP-dependent RNA helicase, putative 3.571e-14
Putative N-terminus
sp_v3.0_unigene161856 SustainPine v3.0 210
AutoFact: dsRNA-binding protein LH1 [Brassica oleracea var. capitata] 8.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene162645 SustainPine v3.0 332
AutoFact: DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana] dbj|BAB11511.1| ATP-dependent RNA helicase A-like protein [Arabidopsis thaliana] gb|AED90801.1| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana] 9.0e-21
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: ATP-dependent RNA helicase, putative 8.574e-07
C-terminus
sp_v3.0_unigene164570 SustainPine v3.0 309
AutoFact: HVSL domain containing protein 3.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene166586 SustainPine v3.0 272
AutoFact: Glycosyl hydrolase-like protein (Fragment) n=6 Tax=Picea sitchensis RepID=E0Z5X8_PICSI 1.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Hydrolase, hydrolyzing O-glycosyl compounds, putative 3.131e-09
Internal
sp_v3.0_unigene167295 SustainPine v3.0 97
AutoFact: beta-D-glucan exohydrolase isoenzyme ExoI [Hordeum vulgare subsp. vulgare] 1.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glycoside hydrolase, family 3, N-terminal 8.71e-09
Internal
sp_v3.0_unigene168155 SustainPine v3.0 180
AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9HYI3_POPTR 6.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene168170 SustainPine v3.0 132
AutoFact: CAF protein n=17 Tax=Camelineae RepID=Q56Y50_ARATH 5.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DsRNA-specific nuclease dicer and related ribonuclease 5.614e-08
Internal
sp_v3.0_unigene174714 SustainPine v3.0 212
AutoFact: 40S ribosomal protein S2 [Trypanosoma brucei TREU927] ref|XP_827949.1| 40S ribosomal protein S2 [Trypanosoma brucei TREU927] gb|EAN78827.1| 40S ribosomal protein S2, putative [Trypanosoma brucei] gb|EAN78837.1| 40S ribosomal protein S2, putative [Trypanos 0.0001
coding
sp_v3.0_unigene174970 SustainPine v3.0 228
AutoFact: TT_ORF1 multi-domain protein 5.0e-09
Sma3: 40S ribosomal protein S2 1.197e-07
coding
sp_v3.0_unigene183107 SustainPine v3.0 260
AutoFact: Unassigned protein 5.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene183603 SustainPine v3.0 334
AutoFact: protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] gb|AEC08442.1| protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] 6.0e-33
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-dependent RNA helicase, putative 8.642e-14
Internal
sp_v3.0_unigene184849 SustainPine v3.0 433
AutoFact: protein dicer-like 2 [Arabidopsis thaliana] ref|NP_001189798.1| protein dicer-like 2 [Arabidopsis thaliana] sp|Q3EBC8.2|DCL2_ARATH RecName: Full=Endoribonuclease Dicer homolog 2; AltName: Full=Dicer-like protein 2; Short=AtDCL2 gb|AEE73924.1| protein dice 3.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dicer-like protein 1.792e-07
C-terminus
sp_v3.0_unigene187694 SustainPine v3.0 717
AutoFact: Glycosyl hydrolase-like protein (Fragment) n=13 Tax=Picea sitchensis RepID=E0ZH83_PICSI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Beta-D-glucan exohydrolase-like protein 5.0e-21
C-terminus
sp_v3.0_unigene188307 SustainPine v3.0 176
AutoFact: HVSL domain containing protein 4.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene189752 SustainPine v3.0 564
AutoFact: beta-D-glucan exohydrolase [Nicotiana tabacum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Beta-D-glucan exohydrolase-like protein 5.541e-21
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain