Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA polymerase sigma factor 54, interaction

Term: IPR002078  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene133 SustainPine v3.0 1235
AutoFact: putative protein phosphatase 2C 20 [Arabidopsis thaliana] gb|AAL06477.1|AF411787_1 At2g20630/F23N11.5 [Arabidopsis thaliana] dbj|BAB84701.1| protein phosphatase 2C [Arabidopsis thaliana] gb|AAM10409.1| At2g20630/F23N11.5 [Arabidopsis thaliana] gb|AAD21710 0.0
FL-Next: Isoform 2 of Probable protein phosphatase 2C 20 OS=Arabidopsis thaliana GN=PPC3-1.2 0.0
Sma3: Protein phosphatase 2c, putative 8.306e-21
Complete
sp_v3.0_unigene352 SustainPine v3.0 1756
AutoFact: Ras-related protein RABA4d n=2 Tax=Arabidopsis RepID=RAA4D_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ras-related protein Rab11A 1.731e-18
Complete
sp_v3.0_unigene2412 SustainPine v3.0 1730
AutoFact: Rab family GTPase n=3 Tax=Selaginella moellendorffii RepID=D8RE14_SELML 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene2613 SustainPine v3.0 1705
AutoFact: Protein phosphatase 2C n=2 Tax=Physcomitrella patens RepID=B1B5N7_9BRYO 0.0
FL-Next: sp=Probable protein phosphatase 2C 24; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Protein phosphatase 2C 6.737e-26
Complete
sp_v3.0_unigene3801 SustainPine v3.0 1707
AutoFact: Rab family GTPase n=1 Tax=Selaginella moellendorffii RepID=D8RRT7_SELML 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene4093 SustainPine v3.0 917
AutoFact: Rab family GTPase n=3 Tax=Selaginella moellendorffii RepID=D8RE14_SELML 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: GTP-binding protein 4.502e-17
Complete
sp_v3.0_unigene7406 SustainPine v3.0 1704
AutoFact: [R] COG1100 GTPase SAR1 and related small G proteins 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Rab11/RabA-family small GTPase 0.0
Complete
sp_v3.0_unigene7830 SustainPine v3.0 1400
AutoFact: small GTP-binding protein [Mesembryanthemum crystallinum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene8317 SustainPine v3.0 2040
AutoFact: PREDICTED: similar to midasin-related n=1 Tax=Vitis vinifera RepID=UPI00019863A5 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene8414 SustainPine v3.0 1989
AutoFact: Ras-related small GTP-binding family protein [Arabidopsis thaliana] sp|Q9C5J9.1|Y5483_ARATH RecName: Full=Uncharacterized GTP-binding protein At5g64813 gb|AAK25913.1|AF360203_1 unknown protein [Arabidopsis thaliana] gb|AAK64108.1| unknown protein [Arabido 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: RAB, member of RAS oncogene family-like 3 4.622e-09
Complete
sp_v3.0_unigene9128 SustainPine v3.0 1012
AutoFact: Ras-related protein RABC1 n=2 Tax=Arabidopsis RepID=RABC1_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Rab18/RabC-family small GTPase 4.197e-19
Complete
sp_v3.0_unigene9180 SustainPine v3.0 1513
AutoFact: Ras-related protein RABB1c n=13 Tax=Spermatophyta RepID=RAB1C_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Rab2-like protein 0.0
Complete
sp_v3.0_unigene9958 SustainPine v3.0 1432
AutoFact: Rab2/RabB-family small GTPase n=4 Tax=Physcomitrella patens subsp. patens RepID=A9SC62_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene10174 SustainPine v3.0 1425
AutoFact: Rab family GTPase n=2 Tax=Selaginella moellendorffii RepID=D8QUM7_SELML 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Rab21-family small GTPase 2.623e-12
Complete
sp_v3.0_unigene10353 SustainPine v3.0 1766
AutoFact: putative protein phosphatase 2C 76 [Arabidopsis thaliana] sp|Q94AT1.1|P2C76_ARATH RecName: Full=Probable protein phosphatase 2C 76; Short=AtPP2C76 gb|AAK76493.1| putative protein phosphatase 2C [Arabidopsis thaliana] gb|AAM14299.1| putative phosphatase 2C 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein phosphatase 2c, putative 3.52e-20
Complete
sp_v3.0_unigene10786 SustainPine v3.0 1476
AutoFact: Rab2/RabB-family small GTPase n=4 Tax=Physcomitrella patens subsp. patens RepID=A9SC62_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: GTP-binding protein 1.704e-17
Complete
sp_v3.0_unigene11037 SustainPine v3.0 1412
AutoFact: Ras-related protein Rab-2-B n=15 Tax=Magnoliophyta RepID=RAB2B_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: GTP-binding protein 3.557e-20
Complete
sp_v3.0_unigene11391 SustainPine v3.0 1072
AutoFact: Probable protein phosphatase 2C 59 n=5 Tax=Magnoliophyta RepID=P2C59_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Catalytic/ protein phosphatase type 2C/ protein serine/threonine phosphatase 4.356e-11
Putative N-terminus
sp_v3.0_unigene11688 SustainPine v3.0 1506
AutoFact: Rab1/RabD-family small GTPase n=7 Tax=Embryophyta RepID=A9SLS3_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene12188 SustainPine v3.0 1311
AutoFact: Rab GTP-binding protein Rab11a [Gossypium hirsutum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ras-related protein Rab11A 1.717e-18
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain