Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA polymerase sigma factor 54, interaction

Term: IPR002078  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene144260 SustainPine v3.0 550
• AutoFact: Rab family GTPase n=3 Tax=Selaginella moellendorffii RepID=D8RE14_SELML 6.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: GTP-binding protein 2.902e-14
Misassembled
sp_v3.0_unigene144611 SustainPine v3.0 497
• AutoFact: protein phosphatase 2C [Medicago sativa] 9.99967e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Protein phosphatase 2c, putative 6.561e-21
Internal
sp_v3.0_unigene148487 SustainPine v3.0 402
• AutoFact: Ras-related protein RABG3b n=2 Tax=Arabidopsis RepID=RAG3B_ARATH 8.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related protein Rab7 7.91e-20
N-terminus
sp_v3.0_unigene150216 SustainPine v3.0 440
• AutoFact: Sigma-54 dependent DNA-binding response regulator n=1 Tax=Marinomonas sp. MED121 RepID=A3YD82_9GAMM 0.0
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene150554 SustainPine v3.0 472
• AutoFact: Ras-related protein Rab-8B n=1 Tax=Dictyostelium discoideum RepID=RAB8B_DICDI 6.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene150565 SustainPine v3.0 436
• AutoFact: Ras-related protein Rab-11B n=2 Tax=Lepeophtheirus salmonis RepID=C1BSD1_9MAXI 9.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related protein Rab11C 7.732e-10
C-terminus
sp_v3.0_unigene150675 SustainPine v3.0 224
• AutoFact: Ras-related protein Rab-5C n=1 Tax=Caligus clemensi RepID=C1C0G6_9MAXI 2.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Rab5/RabF-family small GTPase 1.951e-08
Internal
sp_v3.0_unigene150788 SustainPine v3.0 298
• AutoFact: Ras-related protein RIC1 n=7 Tax=commelinids RepID=RIC1_ORYSJ 2.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small GTP-binding protein 2.582e-08
Internal
sp_v3.0_unigene150919 SustainPine v3.0 155
• AutoFact: Ras-like GTP-binding protein, putative n=2 Tax=Aspergillus RepID=B8NQY9_ASPFN 3.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Rab8/RabE-family small GTPase 2.087e-10
Internal
sp_v3.0_unigene151489 SustainPine v3.0 298
• AutoFact: Rab GTPase n=2 Tax=Dictyosteliida RepID=D3BBG2_POLPA 2.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Rab5/RabF-family small GTPase 5.136e-08
C-terminus
sp_v3.0_unigene151584 SustainPine v3.0 460
• AutoFact: Rab family small GTPase n=1 Tax=Naegleria gruberi RepID=D2VPN7_NAEGR 3.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ethylene-responsive small GTP-binding protein 1.864e-07
C-terminus
sp_v3.0_unigene151668 SustainPine v3.0 242
• AutoFact: GTP-binding protein RAB5 n=2 Tax=Agaricales RepID=A6ZIF4_LENED 5.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Plant-unique Rab5 homolog 2.852e-12
Internal
sp_v3.0_unigene151714 SustainPine v3.0 465
• AutoFact: Ras-related protein Rab11D n=5 Tax=Andropogoneae RepID=B4FJB2_MAIZE 9.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related protein Rab11C 2.347e-15
Putative C-terminus
sp_v3.0_unigene152048 SustainPine v3.0 381
• AutoFact: Rab7 protein n=1 Tax=Trichoplax adhaerens RepID=B3RID8_TRIAD 1.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related protein Rab7 3.381e-18
C-terminus
sp_v3.0_unigene152289 SustainPine v3.0 503
• AutoFact: Zgc:100918 n=6 Tax=Clupeocephala RepID=Q641M4_DANRE 5.00264e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related protein Rab7 1.056e-23
C-terminus
sp_v3.0_unigene152439 SustainPine v3.0 424
• AutoFact: PREDICTED: ras-related protein Rab-11A-like n=1 Tax=Anolis carolinensis RepID=UPI000203AE00 2.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related protein Rab11C 4.552e-15
Putative C-terminus
sp_v3.0_unigene152453 SustainPine v3.0 426
• AutoFact: GTP-binding nuclear protein RAN1, putative n=1 Tax=Ixodes scapularis RepID=B7QIB6_IXOSC 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related nuclear protein 3 5.807e-08
Putative C-terminus
sp_v3.0_unigene152720 SustainPine v3.0 302
• AutoFact: GTP-binding protein yptV1 n=2 Tax=Pucciniales RepID=E3K628_PUCGT 2.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene152890 SustainPine v3.0 469
• AutoFact: GTP-binding protein o-rab1 n=1 Tax=Trichoplax adhaerens RepID=B3RKM7_TRIAD 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small GTP-binding protein 3.66e-20
C-terminus
sp_v3.0_unigene152908 SustainPine v3.0 460
• AutoFact: GTP binding nuclear protein RAN n=1 Tax=Bigelowiella natans RepID=Q5YEU7_BIGNA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related nuclear protein 3 5.807e-08
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain