Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA polymerase sigma factor 54, interaction

Term: IPR002078  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene28901 SustainPine v3.0 2333
• AutoFact: Ras-related protein Rab7 n=11 Tax=core eudicotyledons RepID=RAB7_SOYBN 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related protein Rab7 1.547e-23
Putative Complete
sp_v3.0_unigene29274 SustainPine v3.0 1362
• AutoFact: Ras-related protein Rab-18 n=4 Tax=Poaceae RepID=B6TCF9_MAIZE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene29572 SustainPine v3.0 1302
• AutoFact: GTPase Rab1 n=3 Tax=Pinaceae RepID=B0LXL9_9CONI 0.0
• FL-Next: tr=Rab1; Pinus pinaster (Maritime pine). 0.0
• Sma3: Rab1 0.0
Complete
sp_v3.0_unigene29808 SustainPine v3.0 988
• AutoFact: Ras-related protein Rab-18 n=4 Tax=Poaceae RepID=B6TCF9_MAIZE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Rab18/RabC-family small GTPase 4.127e-19
Complete
sp_v3.0_unigene30005 SustainPine v3.0 475
• AutoFact: Ras-related protein RABH1e n=4 Tax=Brassicaceae RepID=RAH1E_ARATH 2.99878e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Rab6/RabH-family small GTPase 4.264e-10
N-terminus
sp_v3.0_unigene30016 SustainPine v3.0 710
• AutoFact: Ras-related protein Rab-18 n=4 Tax=Poaceae RepID=B6TCF9_MAIZE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Rab18/RabC-family small GTPase 3.776e-20
N-terminus
sp_v3.0_unigene30534 SustainPine v3.0 1094
• AutoFact: RecName: Full=Ras-related protein Rab7 gb|AAD22451.1|AF116243_1 RAS-related GTP-binding protein [Gossypium hirsutum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene31639 SustainPine v3.0 510
• AutoFact: Rab GTPase n=2 Tax=Dictyosteliida RepID=D3BBG2_POLPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related protein RHN1 1.741e-16
C-terminus
sp_v3.0_unigene35676 SustainPine v3.0 915
• AutoFact: Rab family GTPase n=3 Tax=Selaginella moellendorffii RepID=D8RE14_SELML 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: GTP-binding protein 3.112e-17
N-terminus
sp_v3.0_unigene37934 SustainPine v3.0 996
• AutoFact: Ras-related protein Rab-18 [Arabidopsis thaliana] ref|NP_001077675.1| Ras-related protein Rab-18 [Arabidopsis thaliana] ref|NP_001117435.1| Ras-related protein Rab-18 [Arabidopsis thaliana] sp|O23657.1|RABC1_ARATH RecName: Full=Ras-related protein RABC1; 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: GTP-binding protein 4.763e-20
Complete
sp_v3.0_unigene40019 SustainPine v3.0 566
• AutoFact: GTP-binding protein yptv3, putative n=1 Tax=Ricinus communis RepID=B9T5U9_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RAB, member of RAS oncogene family-like 3 4.556e-09
Putative N-terminus
sp_v3.0_unigene45940 SustainPine v3.0 1130
• AutoFact: Rab family GTPase n=3 Tax=Selaginella moellendorffii RepID=D8RE14_SELML 9.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: GTP-binding protein 1.691e-17
Putative Complete
sp_v3.0_unigene51588 SustainPine v3.0 551
• AutoFact: putative protein phosphatase 2C 76 [Arabidopsis thaliana] sp|Q94AT1.1|P2C76_ARATH RecName: Full=Probable protein phosphatase 2C 76; Short=AtPP2C76 gb|AAK76493.1| putative protein phosphatase 2C [Arabidopsis thaliana] gb|AAM14299.1| putative phosphatase 2C 7.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Catalytic/ protein phosphatase type 2C/ protein serine/threonine phosphatase 4.021e-11
Internal
sp_v3.0_unigene51644 SustainPine v3.0 712
• AutoFact: Rab2 family GTPase putative n=1 Tax=Albugo laibachii Nc14 RepID=F0W4W8_9STRA 6.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small GTP-binding protein 7.988e-09
Putative Complete
sp_v3.0_unigene52027 SustainPine v3.0 326
• AutoFact: RAB GTPase H1E [Arabidopsis thaliana] sp|Q9LFT9.1|RAH1E_ARATH RecName: Full=Ras-related protein RABH1e; Short=AtRABH1e emb|CAB96682.1| GTP-binding protein [Arabidopsis thaliana] gb|AED91514.1| RAB GTPase H1E [Arabidopsis thaliana] 2.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Rab6/RabH-family small GTPase 7.24e-11
Internal
sp_v3.0_unigene53106 SustainPine v3.0 417
• AutoFact: Mgp2 GTP-binding protein n=1 Tax=Zea mays RepID=Q41831_MAIZE 1.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related protein Rab11A 1.795e-09
Putative N-terminus
sp_v3.0_unigene53238 SustainPine v3.0 164
• AutoFact: Putative Ras-related protein Rab-1C n=2 Tax=Theria RepID=RAB1C_HUMAN 4.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small GTP-binding protein 2.309e-11
Internal
sp_v3.0_unigene58083 SustainPine v3.0 162
• AutoFact: Midasin n=2 Tax=Oryza sativa Japonica Group RepID=Q109L5_ORYSJ 7.0e-15
• FL-Next: tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya). 0.0
Internal
sp_v3.0_unigene58226 SustainPine v3.0 151
• AutoFact: 60S ribosomal protein L5, mitochondrial n=6 Tax=Solanaceae RepID=RM05_SOLTU 1.0e-05
• FL-Next: sp=60S ribosomal protein L5, mitochondrial; Solanum tuberosum (Potato). Mitochondrion. 0.0
• Sma3: Mitochondrial ribosomal protein L5 2.8026e-45
Putative C-terminus
sp_v3.0_unigene58326 SustainPine v3.0 345
• AutoFact: small GTP-binding protein [Mesembryanthemum crystallinum] 6.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related protein RHN1 1.309e-12
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain