Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA polymerase sigma factor 54, interaction

Term: IPR002078  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene159103 SustainPine v3.0 151
• AutoFact: Ran family small GTPase n=1 Tax=Naegleria gruberi RepID=D2V0X6_NAEGR 1.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related nuclear protein 3 5.807e-08
N-terminus
sp_v3.0_unigene159118 SustainPine v3.0 326
• AutoFact: PREDICTED: ras-related protein Rab-21-like [Monodelphis domestica] 1.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Rab21-family small GTPase 1.034e-11
N-terminus
sp_v3.0_unigene159248 SustainPine v3.0 438
• AutoFact: PREDICTED: similar to Ras-related protein Rab-11B (GTP-binding protein YPT3) n=1 Tax=Equus caballus RepID=UPI0001796599 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: GTP-binding protein 3.243e-17
N-terminus
sp_v3.0_unigene159259 SustainPine v3.0 373
• AutoFact: Rab11 family GTPase putative n=1 Tax=Albugo laibachii Nc14 RepID=F0WXW1_9STRA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related protein Rab11C 7.784e-15
Putative C-terminus
sp_v3.0_unigene159393 SustainPine v3.0 299
• AutoFact: PREDICTED: similar to Ras-related protein Rab-21 n=1 Tax=Ciona intestinalis RepID=UPI0000524B9D 3.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Rab21-family small GTPase 1.626e-13
Internal
sp_v3.0_unigene159561 SustainPine v3.0 319
• AutoFact: small GTP-binding protein [Mesembryanthemum crystallinum] 1.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene161103 SustainPine v3.0 355
• AutoFact: Rab-family small GTPase Rab1A n=1 Tax=Tetrahymena thermophila RepID=E1CAY1_TETTH 4.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small GTP-binding protein 1.309e-17
Putative C-terminus
sp_v3.0_unigene161477 SustainPine v3.0 420
• AutoFact: Probable GTPase Rab7 protein n=2 Tax=Ustilaginaceae RepID=E6ZRR6_9BASI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related protein Rab7 1.187e-12
N-terminus
sp_v3.0_unigene162934 SustainPine v3.0 371
• AutoFact: Rab7 (Fragment) n=1 Tax=Tetrahymena thermophila RepID=Q9U5G8_TETTH 1.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related protein Rab7 8.134e-20
N-terminus
sp_v3.0_unigene162996 SustainPine v3.0 191
• AutoFact: MDN1, midasin homolog (ISS) [Ostreococcus tauri] emb|CAL50315.1| MDN1, midasin homolog (ISS) [Ostreococcus tauri] 6.0e-14
• FL-Next: tr=Midasin; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene164693 SustainPine v3.0 241
• AutoFact: putative GTP-binding protein [Gossypium hirsutum] 6.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related protein Rab11A 5.723e-15
Internal
sp_v3.0_unigene164784 SustainPine v3.0 273
• AutoFact: Ras-related protein RABG3b n=2 Tax=Arabidopsis RepID=RAG3B_ARATH 6.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related protein Rab7 8.23e-13
N-terminus
sp_v3.0_unigene164988 SustainPine v3.0 177
• AutoFact: RAN [Nicotiana sylvestris] gb|AAT40987.1| RAN [Nicotiana sylvestris] 1.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related nuclear protein 3 5.848e-08
N-terminus
sp_v3.0_unigene166120 SustainPine v3.0 422
• AutoFact: ethylene-responsive small GTP-binding protein [Oryza sativa Japonica Group] 1.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Rab8/RabE-family small GTPase 8.27e-11
Putative C-terminus
sp_v3.0_unigene166321 SustainPine v3.0 413
• AutoFact: Rab-type small GTP-binding protein n=3 Tax=Agaricomycetidae RepID=Q4G2I9_PAXIN 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small GTP-binding protein 4.758e-17
Putative N-terminus
sp_v3.0_unigene166920 SustainPine v3.0 155
• AutoFact: Ras-related protein Rab7 n=5 Tax=Agaricales RepID=Q870G4_LENED 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related protein Rab7 7.896e-13
Internal
sp_v3.0_unigene167633 SustainPine v3.0 200
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Rab2/RabB-family small GTPase 9.451e-08
Putative C-terminus
sp_v3.0_unigene186407 SustainPine v3.0 763
• AutoFact: Rab family small GTPase n=1 Tax=Naegleria gruberi RepID=D2UYL5_NAEGR 2.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: GTP-binding protein 1.647e-12
Complete
sp_v3.0_unigene187796 SustainPine v3.0 343
• AutoFact: Rab7/RabG-family small GTPase n=4 Tax=Embryophyta RepID=A9SUA0_PHYPA 5.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related protein Rab7 1.679e-23
N-terminus
sp_v3.0_unigene188912 SustainPine v3.0 499
• AutoFact: Putative Ras-protein Rab7 n=1 Tax=Metarhizium anisopliae ARSEF 23 RepID=E9EL24_METAR 2.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Rab7/RabG-family small GTPase 2.751e-08
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain