Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Histone deacetylase superfamily

Term: IPR000286  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene69573 SustainPine v3.0 183
• AutoFact: Histone deacetylase n=2 Tax=Populus trichocarpa RepID=B9MZ37_POPTR 4.0e-17
• FL-Next: sp=Histone deacetylase 19; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Histone deacetylase 4.747e-26
Internal
sp_v3.0_unigene70308 SustainPine v3.0 370
• AutoFact: Arm domain containing protein 4.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene98510 SustainPine v3.0 359
• AutoFact: histone deacetylase, putative [Arabidopsis thaliana] 2.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Class II RPD3 type histone deacetylase protein 1.468e-08
Internal
sp_v3.0_unigene98724 SustainPine v3.0 1022
• AutoFact: Cleavage and polyadenylation specificity factor subunit 1 n=2 Tax=Arabidopsis RepID=CPSF1_ARATH 0.0
• FL-Next: sp=Cleavage and polyadenylation specificity factor subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Probable cleavage and polyadenylation specificity factor subunit 1 1.656e-09
Internal
sp_v3.0_unigene100333 SustainPine v3.0 387
• AutoFact: Putative histone deacetylase n=1 Tax=Oryza sativa Japonica Group RepID=Q6YVZ3_ORYSJ 2.0e-19
• FL-Next: sp=Histone deacetylase 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Os07g0602200 protein 8.772e-06
Internal
sp_v3.0_unigene100580 SustainPine v3.0 223
• AutoFact: Unassigned protein 1.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene104587 SustainPine v3.0 358
• AutoFact: histone deacetylase 15 [Arabidopsis thaliana] gb|AEE76111.1| histone deacetylase 15 [Arabidopsis thaliana] 3.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene107037 SustainPine v3.0 638
• AutoFact: Histone deacetylase hda1, putative n=1 Tax=Ricinus communis RepID=B9RE34_RICCO 9.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene107858 SustainPine v3.0 438
• AutoFact: Histone deacetylase hda1, putative n=1 Tax=Ricinus communis RepID=B9RE34_RICCO 8.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone deacetylase 5.387e-14
Internal
sp_v3.0_unigene107974 SustainPine v3.0 524
• AutoFact: Histone deacetylase RPD3/HDA1 class II n=3 Tax=Triticeae RepID=C1IC96_HORVU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone deacetylase 3.488e-14
Internal
sp_v3.0_unigene111090 SustainPine v3.0 550
• AutoFact: Histone deacetylase hda2, putative n=1 Tax=Ricinus communis RepID=B9SNC7_RICCO 9.94922e-44
• FL-Next: tr=Histone deacetylase hda2, putative; Ricinus communis (Castor bean). 0.0
Putative Complete
sp_v3.0_unigene123926 SustainPine v3.0 302
• AutoFact: Cleavage and polyadenylation specificity factor subunit 1 n=2 Tax=Arabidopsis RepID=CPSF1_ARATH 3.0e-30
• FL-Next: sp=Cleavage and polyadenylation specificity factor subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Probable cleavage and polyadenylation specificity factor subunit 1 1.248e-09
Internal
sp_v3.0_unigene142666 SustainPine v3.0 746
• AutoFact: YGGT family protein [Arabidopsis thaliana] emb|CAB36768.1| putative protein [Arabidopsis thaliana] emb|CAB79601.1| putative protein [Arabidopsis thaliana] dbj|BAE98662.1| hypothetical protein [Arabidopsis thaliana] gb|AEE85417.1| YGGT family protein [Arab 7.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene144445 SustainPine v3.0 472
• AutoFact: YGGT family protein [Arabidopsis thaliana] emb|CAB36768.1| putative protein [Arabidopsis thaliana] emb|CAB79601.1| putative protein [Arabidopsis thaliana] dbj|BAE98662.1| hypothetical protein [Arabidopsis thaliana] gb|AEE85417.1| YGGT family protein [Arab 4.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene154056 SustainPine v3.0 328
• AutoFact: Histone deacetylase (Fragment) n=1 Tax=Nematostella vectensis RepID=A7RFA3_NEMVE 5.0e-37
• FL-Next: sp=Histone deacetylase 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Histone deacetylase 1.39429e-42
Internal
sp_v3.0_unigene156729 SustainPine v3.0 511
• AutoFact: Histone deacetylase family protein n=1 Tax=Dictyostelium fasciculatum RepID=F4PSW2_9MYCE 0.0
• FL-Next: sp=Probable histone deacetylase 19; Zea mays (Maize). 0.0
• Sma3: Histone deacetylase 1.21072e-42
Internal
sp_v3.0_unigene157278 SustainPine v3.0 210
• AutoFact: Histone deacetylase n=1 Tax=Aedes aegypti RepID=Q17MD0_AEDAE 9.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene163019 SustainPine v3.0 252
• AutoFact: Arm domain containing protein 1.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene165230 SustainPine v3.0 97
• AutoFact: Unassigned protein 4.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene165513 SustainPine v3.0 239
• AutoFact: Histone deacetylase (Fragment) n=7 Tax=rosids RepID=D7SM47_VITVI 4.0e-13
• FL-Next: sp=Putative histone deacetylase 10; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain